Groundwater level prediction using a multiple objective genetic algorithm-grey relational analysis based weighted ensemble of anfis models

Predicting groundwater levels is critical for ensuring sustainable use of an aquifer’s limited groundwater reserves and developing a useful groundwater abstraction management strategy. The purpose of this study was to assess the predictive accuracy and estimation capability of various models based on the Adaptive Neuro Fuzzy Inference System (ANFIS). These models included Differential Evolution-ANFIS (DE-ANFIS), Particle Swarm Optimization-ANFIS (PSO-ANFIS), and traditional Hybrid Algorithm tuned ANFIS (HA-ANFIS) for the one-and multi-week forward forecast of groundwater levels at three observation wells. Model-independent partial autocorrelation functions followed by frequentist lasso regression-based feature selection approaches were used to recognize appropriate input variables for the prediction models. The performances of the ANFIS models were evaluated using various statistical performance evaluation indexes. The results revealed that the optimized ANFIS models performed equally well in predicting one-week-ahead groundwater levels at the observation wells when a set of various performance evaluation indexes were used. For improving prediction accuracy, a weighted-average ensemble of ANFIS models was proposed, in which weights for the individual ANFIS models were calculated using a Multiple Objective Genetic Algorithm (MOGA). The MOGA accounts for a set of benefits (higher values indicate better model performance) and cost (smaller values indicate better model performance) performance indexes calculated on the test dataset. Grey relational analysis was used to select the best solution from a set of feasible solutions produced by a MOGA. A MOGA-based individual model ranking revealed the superiority of DE-ANFIS (weight = 0.827), HA-ANFIS (weight = 0.524), and HAANFIS (weight = 0.697) at observation wells GT8194046, GT8194048, and GT8194049, respectively. Shannon’s entropy-based decision theory was utilized to rank the ensemble and individual ANFIS models using a set of performance indexes. The ranking result indicated that the ensemble model outperformed all individual models at all observation wells (ranking value = 0.987, 0.985, and 0.995 at observation wells GT8194046, GT8194048, and GT8194049, respectively). The worst performers were PSO-ANFIS (ranking value = 0.845), PSO-ANFIS (ranking value = 0.819), and DE-ANFIS (ranking value = 0.900) at observation wells GT8194046, GT8194048, and GT8194049, respectively. The generalization capability of the proposed ensemble modelling approach was evaluated for forecasting 2-, 4-, 6-, and 8-weeks ahead groundwater levels using data from GT8194046. The evaluation results confirmed the useability of the ensemble modelling for forecasting groundwater levels at higher forecasting horizons. The study demonstrated that the ensemble approach may be successfully used to predict multi-week-ahead groundwater levels, utilizing previous lagged groundwater levels as inputs

Benchmarking spike rate inference in population calcium imaging

A fundamental challenge in calcium imaging has been to infer spike rates of neurons from the measured noisy fluorescence traces. We systematically evaluate different spike inference algorithms on a large benchmark dataset (>100,000 spikes) recorded from varying neural tissue (V1 and retina) using different calcium indicators (OGB-1 and GCaMP6). In addition, we introduce a new algorithm based on supervised learning in flexible probabilistic models and find that it performs better than other published techniques. Importantly, it outperforms other algorithms even when applied to entirely new datasets for which no simultaneously recorded data is available. Future data acquired in new experimental conditions can be used to further improve the spike prediction accuracy and generalization performance of the model. Finally, we show that comparing algorithms on artificial data is not informative about performance on real data, suggesting that benchmarking different methods with real-world datasets may greatly facilitate future algorithmic developments in neuroscience

Compressing PDF sets using generative adversarial networks

We present a compression algorithm for parton densities using synthetic replicas generated from the training of a Generative Adversarial Network (GAN). The generated replicas are used to further enhance the statistics of a given Monte Carlo PDF set prior to compression. This results in a compression methodology that is able to provide a compressed set with smaller number of replicas and a more adequate representation of the original probability distribution. We also address the question of whether the GAN could be used as an alternative mechanism to avoid the fitting of large number of replicas.Comment: 16 pages, code at https://github.com/N3PDF/pycompressor, v2: Final version to be published in EPJC. Modified Fig. 9 and fixed typos in Sec.

Precision medicine and artificial intelligence : a pilot study on deep learning for hypoglycemic events detection based on ECG

Tracking the fluctuations in blood glucose levels is important for healthy subjects and crucial diabetic patients. Tight glucose monitoring reduces the risk of hypoglycemia, which can result in a series of complications, especially in diabetic patients, such as confusion, irritability, seizure and can even be fatal in specific conditions. Hypoglycemia affects the electrophysiology of the heart. However, due to strong inter-subject heterogeneity, previous studies based on a cohort of subjects failed to deploy electrocardiogram (ECG)-based hypoglycemic detection systems reliably. The current study used personalised medicine approach and Artificial Intelligence (AI) to automatically detect nocturnal hypoglycemia using a few heartbeats of raw ECG signal recorded with non-invasive, wearable devices, in healthy individuals, monitored 24 hours for 14 consecutive days. Additionally, we present a visualisation method enabling clinicians to visualise which part of the ECG signal (e.g., T-wave, ST-interval) is significantly associated with the hypoglycemic event in each subject, overcoming the intelligibility problem of deep-learning methods. These results advance the feasibility of a real-time, non-invasive hypoglycemia alarming system using short excerpts of ECG signal

Precision medicine and artificial intelligence : a pilot study on deep learning for hypoglycemic events detection based on ECG

Tracking the fluctuations in blood glucose levels is important for healthy subjects and crucial diabetic patients. Tight glucose monitoring reduces the risk of hypoglycemia, which can result in a series of complications, especially in diabetic patients, such as confusion, irritability, seizure and can even be fatal in specific conditions. Hypoglycemia affects the electrophysiology of the heart. However, due to strong inter-subject heterogeneity, previous studies based on a cohort of subjects failed to deploy electrocardiogram (ECG)-based hypoglycemic detection systems reliably. The current study used personalised medicine approach and Artificial Intelligence (AI) to automatically detect nocturnal hypoglycemia using a few heartbeats of raw ECG signal recorded with non-invasive, wearable devices, in healthy individuals, monitored 24 hours for 14 consecutive days. Additionally, we present a visualisation method enabling clinicians to visualise which part of the ECG signal (e.g., T-wave, ST-interval) is significantly associated with the hypoglycemic event in each subject, overcoming the intelligibility problem of deep-learning methods. These results advance the feasibility of a real-time, non-invasive hypoglycemia alarming system using short excerpts of ECG signal

Evaluating Temperature Variations, Energy Fluctuations, and Pathways When Excitons Are Transferred in the FMO Complex

ABSTRACT The Fenna-Matthews-Olson protein of green sulphur bacteria is a model photosynthetic unit. Therein, coupled chromophores transfer energy from antennae to a reaction centre. Close to unit quantum yield efficiencies have been recorded and wave-like transfer also observed in the Fenna-Matthews-Olson complex. The protein also possesses a relatively simple structure. These features have meant that the complex has been the subject of many investigations. In this thesis, primary aims are the assessment of how dynamics in a Fenna-Matthews-Olson monomer are affected by a change in temperature and explicit inclusion (or exclusion) of intra-molecular vibrational modes following a characterization of important values. A genetic type algorithm was crucial in parameterizing equations of motion that described energy transfer. Excellent fits to Fenna-Matthews-Olson spectra at 77 K were obtained by this evolutionary algorithm, so confidence could be expressed in any subsequent results. In the absence of explicitly including vibrational modes, it is proposed that transport of excitation populations is greatly conditioned by fine details in the density of state distributions for excitonic states. Non-trivial energy transfer was observed in one set of simulations; occupation of low-energy states was clearly enhanced at physiological temperatures relative to low temperature. The ‘skew’ of energy distributions, entering into equations of motion via a random sampling technique, are seen as being crucial and these affect resonance conditions in trajectories. When non-resonant vibrational modes were explicitly included in simulations, inter-state beatings were strong although energy transfer was not perceptibly enhanced relative to when only resonant modes were incorporated. Finally, pathways through the complex depended on low energy states with transfer towards the reaction centre inhibited if chromophores in the low to intermediate part of the excitonic spectrum had large resonance gaps