AUTOMATED TREE-LEVEL FOREST QUANTIFICATION USING AIRBORNE LIDAR

Traditional forest management relies on a small field sample and interpretation of aerial photography that not only are costly to execute but also yield inaccurate estimates of the entire forest in question. Airborne light detection and ranging (LiDAR) is a remote sensing technology that records point clouds representing the 3D structure of a forest canopy and the terrain underneath. We present a method for segmenting individual trees from the LiDAR point clouds without making prior assumptions about tree crown shapes and sizes. We then present a method that vertically stratifies the point cloud to an overstory and multiple understory tree canopy layers. Using the stratification method, we modeled the occlusion of higher canopy layers with respect to point density. We also present a distributed computing approach that enables processing the massive data of an arbitrarily large forest. Lastly, we investigated using deep learning for coniferous/deciduous classification of point cloud segments representing individual tree crowns. We applied the developed methods to the University of Kentucky Robinson Forest, a natural, majorly deciduous, closed-canopy forest. 90% of overstory and 47% of understory trees were detected with false positive rates of 14% and 2% respectively. Vertical stratification improved the detection rate of understory trees to 67% at the cost of increasing their false positive rate to 12%. According to our occlusion model, a point density of about 170 pt/m² is needed to segment understory trees located in the third layer as accurately as overstory trees. Using our distributed processing method, we segmented about two million trees within a 7400-ha forest in 2.5 hours using 192 processing cores, showing a speedup of ~170. Our deep learning experiments showed high classification accuracies (~82% coniferous and ~90% deciduous) without the need to manually assemble the features. In conclusion, the methods developed are steps forward to remote, accurate quantification of large natural forests at the individual tree level

Remote Sensing of Forests using Discrete Return Airborne LiDAR

Airborne discrete return light detection and ranging (LiDAR) point clouds covering forested areas can be processed to segment individual trees and retrieve their morphological attributes. Segmenting individual trees in natural deciduous forests, however, remained a challenge because of the complex and multi-layered canopy. In this chapter, we present (i) a robust segmentation method that avoids a priori assumptions about the canopy structure, (ii) a vertical canopy stratification procedure that improves segmentation of understory trees, (iii) an occlusion model for estimating the point density of each canopy stratum, and (iv) a distributed computing approach for efficient processing at the forest level. When applied to the University of Kentucky Robinson Forest, the segmentation method detected about 90% of overstory and 47% of understory trees with over-segmentation rates of 14 and 2%. Stratifying the canopy improved the detection rate of understory trees to 68% at the cost of increasing their over-segmentations to 16%. According to our occlusion model, a point density of ~170 pt/m2 is needed to segment understory trees as accurately as overstory trees. Lastly, using the distributed approach, we segmented about two million trees in the 7440-ha forest in 2.5 hours using 192 processors, which is 167 times faster than using a single processor

Forest Understory Trees Can Be Segmented Accurately Within Sufficiently Dense Airborne Laser Scanning Point Clouds

Airborne laser scanning (LiDAR) point clouds over large forested areas can be processed to segment individual trees and subsequently extract tree-level information. Existing segmentation procedures typically detect more than 90% of overstory trees, yet they barely detect 60% of understory trees because of the occlusion effect of higher canopy layers. Although understory trees provide limited financial value, they are an essential component of ecosystem functioning by offering habitat for numerous wildlife species and influencing stand development. Here we model the occlusion effect in terms of point density. We estimate the fractions of points representing different canopy layers (one overstory and multiple understory) and also pinpoint the required density for reasonable tree segmentation (where accuracy plateaus). We show that at a density of ~170 pt/m² understory trees can likely be segmented as accurately as overstory trees. Given the advancements of LiDAR sensor technology, point clouds will affordably reach this required density. Using modern computational approaches for big data, the denser point clouds can efficiently be processed to ultimately allow accurate remote quantification of forest resources. The methodology can also be adopted for other similar remote sensing or advanced imaging applications such as geological subsurface modelling or biomedical tissue analysis

Forest Understory Trees Can Be Segmented Accurately Within Sufficiently Dense Airborne Laser Scanning Point Clouds

Airborne laser scanning (LiDAR) point clouds over large forested areas can be processed to segment individual trees and subsequently extract tree-level information. Existing segmentation procedures typically detect more than 90% of overstory trees, yet they barely detect 60% of understory trees because of the occlusion effect of higher canopy layers. Although understory trees provide limited financial value, they are an essential component of ecosystem functioning by offering habitat for numerous wildlife species and influencing stand development. Here we model the occlusion effect in terms of point density. We estimate the fractions of points representing different canopy layers (one overstory and multiple understory) and also pinpoint the required density for reasonable tree segmentation (where accuracy plateaus). We show that at a density of ~170 pt/m² understory trees can likely be segmented as accurately as overstory trees. Given the advancements of LiDAR sensor technology, point clouds will affordably reach this required density. Using modern computational approaches for big data, the denser point clouds can efficiently be processed to ultimately allow accurate remote quantification of forest resources. The methodology can also be adopted for other similar remote sensing or advanced imaging applications such as geological subsurface modelling or biomedical tissue analysis

Towards scale-invariant aboveground biomass estimation in Savanna ecosystems using small-footprint waveform lidar

Land degradation is becoming an issue of increasing concern in the savanna ecosystems of southern Africa. As a result, there is a growing need to map structural changes at the fine scale, while retaining the ability to aggregate up to landscape level for analysis across land use gradients. Aboveground biomass (AGB) is an important indicator of vegetation structure and therefore is the ideal variable for estimation from light detection and ranging (lidar) data. To avoid the effects of scale, this paper takes a tree-delineation approach for segmentation of the structurally heterogeneous savanna environment. Diameter at breast height (DBH) measurements collected in-field are then regressed against lidar-derived statistics to estimate DBH on a per tree basis, from which biomass follows naturally by allometry. The result is a spatially explicit biomass map of the savanna environment, believed to be one of the first of its kind, that can be scaled by aggregation of per-tree biomass distributions

A Structural Classification of Australian Vegetation Using ICESat/GLAS, ALOS PALSAR and Landsat Sensor Data

Australia has historically used structural descriptors of height and cover to characterize, differentiate, and map the distribution of woody vegetation across the continent but no national satellite-based structural classification has been available. In this study, we present a new 30-m spatial resolution reference map of Australian forest and woodland structure (height and cover), with this generated by integrating Landsat Thematic Mapper (TM) and Enhanced TM, Advanced Land Observing Satellite (ALOS) Phased Arrayed L-band Synthetic Aperture Radar (PALSAR) and Ice, Cloud, and land Elevation (ICESat),and Geoscience Laser Altimeter System (GLAS) data. ALOS PALSAR and Landsat-derived Foliage Projective Cover (FPC) were used to segment and classify the Australian landscape. Then, from intersecting ICESat waveform data, vertical foliage profiles and height metrics (e.g., 95% percentile height, mean height and the height to maximum vegetation density) were extracted for each of the classes generated. Within each class, and for selected areas, the variability in ICESat profiles was found to be similar with differences between segments of the same class attributed largely to clearance or disturbance events. ICESat metrics and profiles were then assigned to all remaining segments across Australia with the same class allocation. Validation against airborne LiDAR for a range of forest structural types indicated a high degree of correspondence in estimated height measures. On this basis, a map of vegetation height was generated at a national level and was combined with estimates of cover to produce a revised structural classification based on the scheme of the Australian National Vegetation Information System (NVIS). The benefits of integrating the three datasets for segmenting and classifying the landscape and retrieving biophysical attributes was highlighted with this leading the way for future mapping using ALOS-2 PALSAR-2, Landsat/Sentinel-2, Global Ecosystem Dynamics Investigation (GEDI), and ICESat-2 LiDAR data. The ability to map across large areas provides considerable benefits for quantifying carbon dynamics and informing on biodiversity metrics

Cybergis-enabled remote sensing data analytics for deep learning of landscape patterns and dynamics

Mapping landscape patterns and dynamics is essential to various scientific domains and many practical applications. The availability of large-scale and high-resolution light detection and ranging (LiDAR) remote sensing data provides tremendous opportunities to unveil complex landscape patterns and better understand landscape dynamics from a 3D perspective. LiDAR data have been applied to diverse remote sensing applications where large-scale landscape mapping is among the most important topics. While researchers have used LiDAR for understanding landscape patterns and dynamics in many fields, to fully reap the benefits and potential of LiDAR is increasingly dependent on advanced cyberGIS and deep learning approaches. In this context, the central goal of this dissertation is to develop a suite of innovative cyberGIS-enabled deep-learning frameworks for combining LiDAR and optical remote sensing data to analyze landscape patterns and dynamics with four interrelated studies. The first study demonstrates a high-accuracy land-cover mapping method by integrating 3D information from LiDAR with multi-temporal remote sensing data using a 3D deep-learning model. The second study combines a point-based classification algorithm and an object-oriented change detection strategy for urban building change detection using deep learning. The third study develops a deep learning model for accurate hydrological streamline detection using LiDAR, which has paved a new way of harnessing LiDAR data to map landscape patterns and dynamics at unprecedented computational and spatiotemporal scales. The fourth study resolves computational challenges in handling remote sensing big data and deep learning of landscape feature extraction and classification through a cutting-edge cyberGIS approach

Benchmarking airborne laser scanning tree segmentation algorithms in broadleaf forests shows high accuracy only for canopy trees

Individual tree segmentation from airborne laser scanning data is a longstanding and important challenge in forest remote sensing. Tree segmentation algorithms are widely available, but robust intercomparison studies are rare due to the difficulty of obtaining reliable reference data. Here we provide a benchmark data set for temperate and tropical broadleaf forests generated from labelled terrestrial laser scanning data. We compared the performance of four widely used tree segmentation algorithms against this benchmark data set. All algorithms performed reasonably well on the canopy trees. The point cloud-based algorithm AMS3D (Adaptive Mean Shift 3D) had the highest overall accuracy, closely followed by the 2D raster based region growing algorithm Dalponte2016 +. However, all algorithms failed to accurately segment the understory trees. This result was consistent across both forest types. This study emphasises the need to assess tree segmentation algorithms directly using benchmark data, rather than comparing with forest indices such as biomass or the number and size distribution of trees. We provide the first openly available benchmark data set for tropical forests and we hope future studies will extend this work to other regions