Wavelet-based medical image fusion via a non-linear operator

Medical image fusion has been extensively used to aid medical diagnosis by combining images of various modalities such as Computed Tomography (CT) and Magnetic Resonance Image (MRI) into a single output image that contains salient features from both inputs. This paper proposes a novel fusion algorithm through the use of a non-linear fusion operator, based on the low sub-band coefficients of the Discrete Wavelet Transform (DWT). Rather than employing the conventional mean rule for approximation sub-bands, a modified approach is taken by the introduction of a non-linear fusion rule that exploits the multimodal nature of the image inputs by prioritizing the stronger coefficients. Performance evaluation of CT-MRI image fusion datasets based on a range of wavelet filter banks shows that the algorithm boasts improved scores of up to 92% as compared to established methods. Overall, the non-linear fusion rule holds strong potential to help improve image fusion applications in medicine and indeed other fields

Structural Similarity based Anatomical and Functional Brain Imaging Fusion

Multimodal medical image fusion helps in combining contrasting features from two or more input imaging modalities to represent fused information in a single image. One of the pivotal clinical applications of medical image fusion is the merging of anatomical and functional modalities for fast diagnosis of malignant tissues. In this paper, we present a novel end-to-end unsupervised learning-based Convolutional Neural Network (CNN) for fusing the high and low frequency components of MRI-PET grayscale image pairs, publicly available at ADNI, by exploiting Structural Similarity Index (SSIM) as the loss function during training. We then apply color coding for the visualization of the fused image by quantifying the contribution of each input image in terms of the partial derivatives of the fused image. We find that our fusion and visualization approach results in better visual perception of the fused image, while also comparing favorably to previous methods when applying various quantitative assessment metrics.Comment: Accepted at MICCAI-MBIA 201

CentralNet: a Multilayer Approach for Multimodal Fusion

This paper proposes a novel multimodal fusion approach, aiming to produce best possible decisions by integrating information coming from multiple media. While most of the past multimodal approaches either work by projecting the features of different modalities into the same space, or by coordinating the representations of each modality through the use of constraints, our approach borrows from both visions. More specifically, assuming each modality can be processed by a separated deep convolutional network, allowing to take decisions independently from each modality, we introduce a central network linking the modality specific networks. This central network not only provides a common feature embedding but also regularizes the modality specific networks through the use of multi-task learning. The proposed approach is validated on 4 different computer vision tasks on which it consistently improves the accuracy of existing multimodal fusion approaches

An improved approach for medical image fusion using sparse representation and Siamese convolutional neural network

Multimodal image fusion is a contemporary branch of medical imaging that aims to increase the accuracy of clinical diagnosis of the disease stage development. The fusion of different image modalities can be a viable medical imaging approach. It combines the best features to produce a composite image with higher quality than its predecessors and can significantly improve medical diagnosis. Recently, sparse representation (SR) and Siamese Convolutional Neural Network (SCNN) methods have been introduced independently for image fusion. However, some of the results from these approaches have recorded defects, such as edge blur, less visibility, and blocking artifacts. To remedy these deficiencies, in this paper, a smart blending approach based on a combination of SR and SCNN is introduced for image fusion, which comprises three steps as follows. Firstly, entire source images are fed into the classical orthogonal matching pursuit (OMP), where the SR-fused image is obtained using the max-rule that aims to improve pixel localization. Secondly, a novel scheme of SCNN-based K-SVD dictionary learning is re-employed for each source image. The method has shown good non-linearity behavior, contributing to increasing the fused output's sparsity characteristics and demonstrating better extraction and transfer of image details to the output fused image. Lastly, the fusion rule step employs a linear combination between steps 1 and 2 to obtain the final fused image. The results depict that the proposed method is advantageous, compared to other previous methods, notably by suppressing the artifacts produced by the traditional SR and SCNN model

Visual Information Retrieval in Endoscopic Video Archives

In endoscopic procedures, surgeons work with live video streams from the inside of their subjects. A main source for documentation of procedures are still frames from the video, identified and taken during the surgery. However, with growing demands and technical means, the streams are saved to storage servers and the surgeons need to retrieve parts of the videos on demand. In this submission we present a demo application allowing for video retrieval based on visual features and late fusion, which allows surgeons to re-find shots taken during the procedure.Comment: Paper accepted at the IEEE/ACM 13th International Workshop on Content-Based Multimedia Indexing (CBMI) in Prague (Czech Republic) between 10 and 12 June 201

Learning Deep Similarity Metric for 3D MR-TRUS Registration

Purpose: The fusion of transrectal ultrasound (TRUS) and magnetic resonance (MR) images for guiding targeted prostate biopsy has significantly improved the biopsy yield of aggressive cancers. A key component of MR-TRUS fusion is image registration. However, it is very challenging to obtain a robust automatic MR-TRUS registration due to the large appearance difference between the two imaging modalities. The work presented in this paper aims to tackle this problem by addressing two challenges: (i) the definition of a suitable similarity metric and (ii) the determination of a suitable optimization strategy. Methods: This work proposes the use of a deep convolutional neural network to learn a similarity metric for MR-TRUS registration. We also use a composite optimization strategy that explores the solution space in order to search for a suitable initialization for the second-order optimization of the learned metric. Further, a multi-pass approach is used in order to smooth the metric for optimization. Results: The learned similarity metric outperforms the classical mutual information and also the state-of-the-art MIND feature based methods. The results indicate that the overall registration framework has a large capture range. The proposed deep similarity metric based approach obtained a mean TRE of 3.86mm (with an initial TRE of 16mm) for this challenging problem. Conclusion: A similarity metric that is learned using a deep neural network can be used to assess the quality of any given image registration and can be used in conjunction with the aforementioned optimization framework to perform automatic registration that is robust to poor initialization.Comment: To appear on IJCAR

Improving Patch-Based Convolutional Neural Networks for MRI Brain Tumor Segmentation by Leveraging Location Information.

The manual brain tumor annotation process is time consuming and resource consuming, therefore, an automated and accurate brain tumor segmentation tool is greatly in demand. In this paper, we introduce a novel method to integrate location information with the state-of-the-art patch-based neural networks for brain tumor segmentation. This is motivated by the observation that lesions are not uniformly distributed across different brain parcellation regions and that a locality-sensitive segmentation is likely to obtain better segmentation accuracy. Toward this, we use an existing brain parcellation atlas in the Montreal Neurological Institute (MNI) space and map this atlas to the individual subject data. This mapped atlas in the subject data space is integrated with structural Magnetic Resonance (MR) imaging data, and patch-based neural networks, including 3D U-Net and DeepMedic, are trained to classify the different brain lesions. Multiple state-of-the-art neural networks are trained and integrated with XGBoost fusion in the proposed two-level ensemble method. The first level reduces the uncertainty of the same type of models with different seed initializations, and the second level leverages the advantages of different types of neural network models. The proposed location information fusion method improves the segmentation performance of state-of-the-art networks including 3D U-Net and DeepMedic. Our proposed ensemble also achieves better segmentation performance compared to the state-of-the-art networks in BraTS 2017 and rivals state-of-the-art networks in BraTS 2018. Detailed results are provided on the public multimodal brain tumor segmentation (BraTS) benchmarks