Veni Vidi Vici, A Three-Phase Scenario For Parameter Space Analysis in Image Analysis and Visualization

Automatic analysis of the enormous sets of images is a critical task in life sciences. This faces many challenges such as: algorithms are highly parameterized, significant human input is intertwined, and lacking a standard meta-visualization approach. This paper proposes an alternative iterative approach for optimizing input parameters, saving time by minimizing the user involvement, and allowing for understanding the workflow of algorithms and discovering new ones. The main focus is on developing an interactive visualization technique that enables users to analyze the relationships between sampled input parameters and corresponding output. This technique is implemented as a prototype called Veni Vidi Vici, or "I came, I saw, I conquered." This strategy is inspired by the mathematical formulas of numbering computable functions and is developed atop ImageJ, a scientific image processing program. A case study is presented to investigate the proposed framework. Finally, the paper explores some potential future issues in the application of the proposed approach in parameter space analysis in visualization

Optimum non linear binary image restoration through linear grey-scale operations

Non-linear image processing operators give excellent results in a number of image processing tasks such as restoration and object recognition. However they are frequently excluded from use in solutions because the system designer does not wish to introduce additional hardware or algorithms and because their design can appear to be ad hoc. In practice the median filter is often used though it is rarely optimal. This paper explains how various non-linear image processing operators may be implemented on a basic linear image processing system using only convolution and thresholding operations. The paper is aimed at image processing system developers wishing to include some non-linear processing operators without introducing additional system capabilities such as extra hardware components or software toolboxes. It may also be of benefit to the interested reader wishing to learn more about non-linear operators and alternative methods of design and implementation. The non-linear tools include various components of mathematical morphology, median and weighted median operators and various order statistic filters. As well as describing novel algorithms for implementation within a linear system the paper also explains how the optimum filter parameters may be estimated for a given image processing task. This novel approach is based on the weight monotonic property and is a direct rather than iterated method

A new kernel method for hyperspectral image feature extraction

Hyperspectral image provides abundant spectral information for remote discrimination of subtle differences in ground covers. However, the increasing spectral dimensions, as well as the information redundancy, make the analysis and interpretation of hyperspectral images a challenge. Feature extraction is a very important step for hyperspectral image processing. Feature extraction methods aim at reducing the dimension of data, while preserving as much information as possible. Particularly, nonlinear feature extraction methods (e.g. kernel minimum noise fraction (KMNF) transformation) have been reported to benefit many applications of hyperspectral remote sensing, due to their good preservation of high-order structures of the original data. However, conventional KMNF or its extensions have some limitations on noise fraction estimation during the feature extraction, and this leads to poor performances for post-applications. This paper proposes a novel nonlinear feature extraction method for hyperspectral images. Instead of estimating noise fraction by the nearest neighborhood information (within a sliding window), the proposed method explores the use of image segmentation. The approach benefits both noise fraction estimation and information preservation, and enables a significant improvement for classification. Experimental results on two real hyperspectral images demonstrate the efficiency of the proposed method. Compared to conventional KMNF, the improvements of the method on two hyperspectral image classification are 8 and 11%. This nonlinear feature extraction method can be also applied to other disciplines where high-dimensional data analysis is required

Identification of the transition rule in a modified cellular automata model: the case of dendritic NH4Br crystal growth

A method of identifying the transition rule, encapsulated in a modified cellular automata (CA) model, is demonstrated using experimentally observed evolution of dendritic crystal growth patterns in NH4Br crystals. The influence of the factors, such as experimental set-up and image pre-processing, colour and size calibrations, on the method of identification are discussed in detail. A noise reduction parameter and the diffusion velocity of the crystal boundary are also considered. The results show that the proposed method can in principle provide a good representation of the dendritic growth anisotropy of any system

The Data Big Bang and the Expanding Digital Universe: High-Dimensional, Complex and Massive Data Sets in an Inflationary Epoch

Recent and forthcoming advances in instrumentation, and giant new surveys, are creating astronomical data sets that are not amenable to the methods of analysis familiar to astronomers. Traditional methods are often inadequate not merely because of the size in bytes of the data sets, but also because of the complexity of modern data sets. Mathematical limitations of familiar algorithms and techniques in dealing with such data sets create a critical need for new paradigms for the representation, analysis and scientific visualization (as opposed to illustrative visualization) of heterogeneous, multiresolution data across application domains. Some of the problems presented by the new data sets have been addressed by other disciplines such as applied mathematics, statistics and machine learning and have been utilized by other sciences such as space-based geosciences. Unfortunately, valuable results pertaining to these problems are mostly to be found only in publications outside of astronomy. Here we offer brief overviews of a number of concepts, techniques and developments, some "old" and some new. These are generally unknown to most of the astronomical community, but are vital to the analysis and visualization of complex datasets and images. In order for astronomers to take advantage of the richness and complexity of the new era of data, and to be able to identify, adopt, and apply new solutions, the astronomical community needs a certain degree of awareness and understanding of the new concepts. One of the goals of this paper is to help bridge the gap between applied mathematics, artificial intelligence and computer science on the one side and astronomy on the other.Comment: 24 pages, 8 Figures, 1 Table. Accepted for publication: "Advances in Astronomy, special issue "Robotic Astronomy

Airborne photogrammetry and LIDAR for DSM extraction and 3D change detection over an urban area : a comparative study

A digital surface model (DSM) extracted from stereoscopic aerial images, acquired in March 2000, is compared with a DSM derived from airborne light detection and ranging (lidar) data collected in July 2009. Three densely built-up study areas in the city centre of Ghent, Belgium, are selected, each covering approximately 0.4 km(2). The surface models, generated from the two different 3D acquisition methods, are compared qualitatively and quantitatively as to what extent they are suitable in modelling an urban environment, in particular for the 3D reconstruction of buildings. Then the data sets, which are acquired at two different epochs t(1) and t(2), are investigated as to what extent 3D (building) changes can be detected and modelled over the time interval. A difference model, generated by pixel-wise subtracting of both DSMs, indicates changes in elevation. Filters are proposed to differentiate 'real' building changes from false alarms provoked by model noise, outliers, vegetation, etc. A final 3D building change model maps all destructed and newly constructed buildings within the time interval t(2) - t(1). Based on the change model, the surface and volume of the building changes can be quantified