Nonbipartite Dulmage-Mendelsohn Decomposition for Berge Duality

The Dulmage-Mendelsohn decomposition is a classical canonical decomposition in matching theory applicable for bipartite graphs, and is famous not only for its application in the field of matrix computation, but also for providing a prototypal structure in matroidal optimization theory. The Dulmage-Mendelsohn decomposition is stated and proved using the two color classes, and therefore generalizing this decomposition for nonbipartite graphs has been a difficult task. In this paper, we obtain a new canonical decomposition that is a generalization of the Dulmage-Mendelsohn decomposition for arbitrary graphs, using a recently introduced tool in matching theory, the basilica decomposition. Our result enables us to understand all known canonical decompositions in a unified way. Furthermore, we apply our result to derive a new theorem regarding barriers. The duality theorem for the maximum matching problem is the celebrated Berge formula, in which dual optimizers are known as barriers. Several results regarding maximal barriers have been derived by known canonical decompositions, however no characterization has been known for general graphs. In this paper, we provide a characterization of the family of maximal barriers in general graphs, in which the known results are developed and unified

Linear rank-width of distance-hereditary graphs I. A polynomial-time algorithm

Linear rank-width is a linearized variation of rank-width, and it is deeply related to matroid path-width. In this paper, we show that the linear rank-width of every $n$-vertex distance-hereditary graph, equivalently a graph of rank-width at most $1$, can be computed in time $\mathcal{O}(n^2\cdot \log_2 n)$, and a linear layout witnessing the linear rank-width can be computed with the same time complexity. As a corollary, we show that the path-width of every $n$-element matroid of branch-width at most $2$ can be computed in time $\mathcal{O}(n^2\cdot \log_2 n)$, provided that the matroid is given by an independent set oracle. To establish this result, we present a characterization of the linear rank-width of distance-hereditary graphs in terms of their canonical split decompositions. This characterization is similar to the known characterization of the path-width of forests given by Ellis, Sudborough, and Turner [The vertex separation and search number of a graph. Inf. Comput., 113(1):50--79, 1994]. However, different from forests, it is non-trivial to relate substructures of the canonical split decomposition of a graph with some substructures of the given graph. We introduce a notion of `limbs' of canonical split decompositions, which correspond to certain vertex-minors of the original graph, for the right characterization.Comment: 28 pages, 3 figures, 2 table. A preliminary version appeared in the proceedings of WG'1

The Fibers and Range of Reduction Graphs in Ciliates

The biological process of gene assembly has been modeled based on three types of string rewriting rules, called string pointer rules, defined on so-called legal strings. It has been shown that reduction graphs, graphs that are based on the notion of breakpoint graph in the theory of sorting by reversal, for legal strings provide valuable insights into the gene assembly process. We characterize which legal strings obtain the same reduction graph (up to isomorphism), and moreover we characterize which graphs are (isomorphic to) reduction graphs.Comment: 24 pages, 13 figure

Computing Graph Roots Without Short Cycles

Graph G is the square of graph H if two vertices x, y have an edge in G if and only if x, y are of distance at most two in H. Given H it is easy to compute its square H2, however Motwani and Sudan proved that it is NP-complete to determine if a given graph G is the square of some graph H (of girth 3). In this paper we consider the characterization and recognition problems of graphs that are squares of graphs of small girth, i.e. to determine if G = H2 for some graph H of small girth. The main results are the following. - There is a graph theoretical characterization for graphs that are squares of some graph of girth at least 7. A corollary is that if a graph G has a square root H of girth at least 7 then H is unique up to isomorphism. - There is a polynomial time algorithm to recognize if G = H2 for some graph H of girth at least 6. - It is NP-complete to recognize if G = H2 for some graph H of girth 4. These results almost provide a dichotomy theorem for the complexity of the recognition problem in terms of girth of the square roots. The algorithmic and graph theoretical results generalize previous results on tree square roots, and provide polynomial time algorithms to compute a graph square root of small girth if it exists. Some open questions and conjectures will also be discussed