XSEDE: eXtreme Science and Engineering Discovery Environment Third Quarter 2012 Report

The Extreme Science and Engineering Discovery Environment (XSEDE) is the most advanced, powerful, and robust collection of integrated digital resources and services in the world. It is an integrated cyberinfrastructure ecosystem with singular interfaces for allocations, support, and other key services that researchers can use to interactively share computing resources, data, and expertise.This a report of project activities and highlights from the third quarter of 2012.National Science Foundation, OCI-105357

New cross-layer techniques for multi-criteria scheduling in large-scale systems

The global ecosystem of information technology (IT) is in transition to a new generation of applications that require more and more intensive data acquisition, processing and storage systems. As a result of that change towards data intensive computing, there is a growing overlap between high performance computing (HPC) and Big Data techniques in applications, since many HPC applications produce large volumes of data, and Big Data needs HPC capabilities. The hypothesis of this PhD. thesis is that the potential interoperability and convergence of the HPC and Big Data systems are crucial for the future, being essential the unification of both paradigms to address a broad spectrum of research domains. For this reason, the main objective of this Phd. thesis is purposing and developing a monitoring system to allow the HPC and Big Data convergence, thanks to giving information about behaviors of applications in a system which execute both kind of them, giving information to improve scalability, data locality, and to allow adaptability to large scale computers. To achieve this goal, this work is focused on the design of resource monitoring and discovery to exploit parallelism at all levels. These collected data are disseminated to facilitate global improvements at the whole system, and, thus, avoid mismatches between layers. The result is a two-level monitoring framework (both at node and application level) with a low computational load, scalable, and that can communicate with different modules thanks to an API provided for this purpose. All data collected is disseminated to facilitate the implementation of improvements globally throughout the system, and thus avoid mismatches between layers, which combined with the techniques applied to deal with fault tolerance, makes the system robust and with high availability. On the other hand, the developed framework includes a task scheduler capable of managing the launch of applications, their migration between nodes, as well as the possibility of dynamically increasing or decreasing the number of processes. All these thanks to the cooperation with other modules that are integrated into LIMITLESS, and whose objective is to optimize the execution of a stack of applications based on multi-criteria policies. This scheduling mode is called coarse-grain scheduling based on monitoring. For better performance and in order to further reduce the overhead during the monitorization, different optimizations have been applied at different levels to try to reduce communications between components, while trying to avoid the loss of information. To achieve this objective, data filtering techniques, Machine Learning (ML) algorithms, and Neural Networks (NN) have been used. In order to improve the scheduling process and to design new multi-criteria scheduling policies, the monitoring information has been combined with other ML algorithms to identify (through classification algorithms) the applications and their execution phases, doing offline profiling. Thanks to this feature, LIMITLESS can detect which phase is executing an application and tries to share the computational resources with other applications that are compatible (there is no performance degradation between them when both are running at the same time). This feature is called fine-grain scheduling, and can reduce the makespan of the use cases while makes efficient use of the computational resources that other applications do not use.El ecosistema global de las tecnologías de la información (IT) se encuentra en transición a una nueva generación de aplicaciones que requieren sistemas de adquisición de datos, procesamiento y almacenamiento cada vez más intensivo. Como resultado de ese cambio hacia la computación intensiva de datos, existe una superposición, cada vez mayor, entre la computación de alto rendimiento (HPC) y las técnicas Big Data en las aplicaciones, pues muchas aplicaciones HPC producen grandes volúmenes de datos, y Big Data necesita capacidades HPC. La hipótesis de esta tesis es que hay un gran potencial en la interoperabilidad y convergencia de los sistemas HPC y Big Data, siendo crucial para el futuro tratar una unificación de ambos para hacer frente a un amplio espectro de problemas de investigación. Por lo tanto, el objetivo principal de esta tesis es la propuesta y desarrollo de un sistema de monitorización que facilite la convergencia de los paradigmas HPC y Big Data gracias a la provisión de datos sobre el comportamiento de las aplicaciones en un entorno en el que se pueden ejecutar aplicaciones de ambos mundos, ofreciendo información útil para mejorar la escalabilidad, la explotación de la localidad de datos y la adaptabilidad en los computadores de gran escala. Para lograr este objetivo, el foco se ha centrado en el diseño de mecanismos de monitorización y localización de recursos para explotar el paralelismo en todos los niveles de la pila del software. El resultado es un framework de monitorización en dos niveles (tanto a nivel de nodo como de aplicación) con una baja carga computacional, escalable, y que se puede comunicar con distintos módulos gracias a una API proporcionada para tal objetivo. Todos datos recolectados se difunden para facilitar la realización de mejoras de manera global en todo el sistema, y así evitar desajustes entre capas, lo que combinado con las técnicas aplicadas para lidiar con la tolerancia a fallos, hace que el sistema sea robusto y con una alta disponibilidad. Por otro lado, el framework desarrollado incluye un planificador de tareas capaz de gestionar el lanzamiento de aplicaciones, la migración de las mismas entre nodos, además de la posibilidad de incrementar o disminuir su número de procesos de forma dinámica. Todo ello gracias a la cooperación con otros módulos que se integran en LIMITLESS, y cuyo objetivo es optimizar la ejecución de una pila de aplicaciones en base a políticas multicriterio. Esta funcionalidad se llama planificación de grano grueso. Para un mejor desempeño y con el objetivo de reducir más aún la carga durante la ejecución, se han aplicado distintas optimizaciones en distintos niveles para tratar de reducir las comunicaciones entre componentes, a la vez que se trata de evitar la pérdida de información. Para lograr este objetivo se ha hecho uso de técnicas de filtrado de datos, algoritmos de Machine Learning (ML), y Redes Neuronales (NN). Finalmente, para obtener mejores resultados en la planificación de aplicaciones y para diseñar nuevas políticas de planificación multi-criterio, los datos de monitorización recolectados han sido combinados con nuevos algoritmos de ML para identificar (por medio de algoritmos de clasificación) aplicaciones y sus fases de ejecución. Todo ello realizando tareas de profiling offline. Gracias a estas técnicas, LIMITLESS puede detectar en qué fase de su ejecución se encuentra una determinada aplicación e intentar compartir los recursos de computacionales con otras aplicaciones que sean compatibles (no se produce una degradación del rendimiento entre ellas cuando ambas se ejecutan a la vez en el mismo nodo). Esta funcionalidad se llama planificación de grano fino y puede reducir el tiempo total de ejecución de la pila de aplicaciones en los casos de uso porque realiza un uso más eficiente de los recursos de las máquinas.This PhD dissertation has been partially supported by the Spanish Ministry of Science and Innovation under an FPI fellowship associated to a National Project with reference TIN2016-79637-P (from July 1, 2018 to October 10, 2021)Programa de Doctorado en Ciencia y Tecnología Informática por la Universidad Carlos III de MadridPresidente: Félix García Carballeira.- Secretario: Pedro Ángel Cuenca Castillo.- Vocal: María Cristina V. Marinesc

Power Bounded Computing on Current & Emerging HPC Systems

Power has become a critical constraint for the evolution of large scale High Performance Computing (HPC) systems and commercial data centers. This constraint spans almost every level of computing technologies, from IC chips all the way up to data centers due to physical, technical, and economic reasons. To cope with this reality, it is necessary to understand how available or permissible power impacts the design and performance of emergent computer systems. For this reason, we propose power bounded computing and corresponding technologies to optimize performance on HPC systems with limited power budgets. We have multiple research objectives in this dissertation. They center on the understanding of the interaction between performance, power bounds, and a hierarchical power management strategy. First, we develop heuristics and application aware power allocation methods to improve application performance on a single node. Second, we develop algorithms to coordinate power across nodes and components based on application characteristic and power budget on a cluster. Third, we investigate performance interference induced by hardware and power contentions, and propose a contention aware job scheduling to maximize system throughput under given power budgets for node sharing system. Fourth, we extend to GPU-accelerated systems and workloads and develop an online dynamic performance & power approach to meet both performance requirement and power efficiency. Power bounded computing improves performance scalability and power efficiency and decreases operation costs of HPC systems and data centers. This dissertation opens up several new ways for research in power bounded computing to address the power challenges in HPC systems. The proposed power and resource management techniques provide new directions and guidelines to green exscale computing and other computing systems