Alpha Entanglement Codes: Practical Erasure Codes to Archive Data in Unreliable Environments

Data centres that use consumer-grade disks drives and distributed peer-to-peer systems are unreliable environments to archive data without enough redundancy. Most redundancy schemes are not completely effective for providing high availability, durability and integrity in the long-term. We propose alpha entanglement codes, a mechanism that creates a virtual layer of highly interconnected storage devices to propagate redundant information across a large scale storage system. Our motivation is to design flexible and practical erasure codes with high fault-tolerance to improve data durability and availability even in catastrophic scenarios. By flexible and practical, we mean code settings that can be adapted to future requirements and practical implementations with reasonable trade-offs between security, resource usage and performance. The codes have three parameters. Alpha increases storage overhead linearly but increases the possible paths to recover data exponentially. Two other parameters increase fault-tolerance even further without the need of additional storage. As a result, an entangled storage system can provide high availability, durability and offer additional integrity: it is more difficult to modify data undetectably. We evaluate how several redundancy schemes perform in unreliable environments and show that alpha entanglement codes are flexible and practical codes. Remarkably, they excel at code locality, hence, they reduce repair costs and become less dependent on storage locations with poor availability. Our solution outperforms Reed-Solomon codes in many disaster recovery scenarios.Comment: The publication has 12 pages and 13 figures. This work was partially supported by Swiss National Science Foundation SNSF Doc.Mobility 162014, 2018 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks (DSN

On the origin of the mitochondrial genetic code: Towards a unified mathematical framework for the management of genetic information

The origin of the genetic code represents one of the most challenging problems in molecular evolution. The genetic code is an important universal feature of extant organisms and indicates a common ancestry of different forms of life on earth. Known variants of the genetic code can be mainly divided in mitochondrial and nuclear classes. Here we provide a new insight on the origin of the mitochondrial genetic code: we found that its degeneracy distribution can be explained by using a mathematical approach recently developed for the description of the Euplotes nuclear variant of the genetic code. The results point to a primeval mitochondrial genetic code composed of four base codons, which we call tesserae, that, among other features, exhibit outstanding error detection capabilities. The theoretical description suggests also a formulation of a plausible biological theory about the origin of protein coding. Such theory is based on the symmetry properties of hypothetical primeval chemical adaptors between nucleic acids and amino acids (ancient tRNA’s). Our paper provides a unified mathematical framework for different hypotheses on the origin of genetic coding. Also, it contributes to revisit our present view about the evolutionary steps that led to extant genetic codes by giving a new first-principles perspective on the difficult problem of the origin of the genetic code, and consequently, on the origin of life on earth

The Self-Organization of Meaning and the Reflexive Communication of Information

Following a suggestion of Warren Weaver, we extend the Shannon model of communication piecemeal into a complex systems model in which communication is differentiated both vertically and horizontally. This model enables us to bridge the divide between Niklas Luhmann's theory of the self-organization of meaning in communications and empirical research using information theory. First, we distinguish between communication relations and correlations among patterns of relations. The correlations span a vector space in which relations are positioned and can be provided with meaning. Second, positions provide reflexive perspectives. Whereas the different meanings are integrated locally, each instantiation opens global perspectives--"horizons of meaning"--along eigenvectors of the communication matrix. These next-order codifications of meaning can be expected to generate redundancies when interacting in instantiations. Increases in redundancy indicate new options and can be measured as local reduction of prevailing uncertainty (in bits). The systemic generation of new options can be considered as a hallmark of the knowledge-based economy.Comment: accepted for publication in Social Science Information, March 21, 201

Mitigating smart card fault injection with link-time code rewriting: a feasibility study

We present a feasibility study to protect smart card software against fault-injection attacks by means of binary code rewriting. We implemented a range of protection techniques in a link-time rewriter and evaluate and discuss the obtained coverage, the associated overhead and engineering effort, as well as its practical usability

Criticality Aware Soft Error Mitigation in the Configuration Memory of SRAM based FPGA

Efficient low complexity error correcting code(ECC) is considered as an effective technique for mitigation of multi-bit upset (MBU) in the configuration memory(CM)of static random access memory (SRAM) based Field Programmable Gate Array (FPGA) devices. Traditional multi-bit ECCs have large overhead and complex decoding circuit to correct adjacent multibit error. In this work, we propose a simple multi-bit ECC which uses Secure Hash Algorithm for error detection and parity based two dimensional Erasure Product Code for error correction. Present error mitigation techniques perform error correction in the CM without considering the criticality or the execution period of the tasks allocated in different portion of CM. In most of the cases, error correction is not done in the right instant, which sometimes either suspends normal system operation or wastes hardware resources for less critical tasks. In this paper,we advocate for a dynamic priority-based hardware scheduling algorithm which chooses the tasks for error correction based on their area, execution period and criticality. The proposed method has been validated in terms of overhead due to redundant bits, error correction time and system reliabilityComment: 6 pages, 8 figures, conferenc