Terrestrial laser scanning and low magnetic field digitization yield similar architectural coarse root traits for 32-year-old Pinus ponderosa trees

Background Understanding how trees develop their root systems is crucial for the comprehension of how wildland and urban forest ecosystems plastically respond to disturbances such as harvest, fire, and climate change. The interplay between the endogenously determined root traits and the response to environmental stimuli results in tree adaptations to biotic and abiotic factors, influencing stability, carbon allocation, and nutrient uptake. Combining the three-dimensional structure of the root system, with root morphological trait information promotes a robust understanding of root function and adaptation plasticity. Low Magnetic Field Digitization coupled with AMAPmod (botAnique et Modelisation de l’Architecture des Plantes) software has been the best-performing method for describing root system architecture and providing reliable measurements of coarse root traits, but the pace and scale of data collection remain difficult. Instrumentation and applications related to Terrestrial Laser Scanning (TLS) have advanced appreciably, and when coupled with Quantitative Structure Models (QSM), have shown some potential toward robust measurements of tree root systems. Here we compare, we believe for the first time, these two methodologies by analyzing the root system of 32-year-old Pinus ponderosa trees Results In general, at the total root system level and by root-order class, both methods yielded comparable values for the root traits volume, length, and number. QSM for each root trait was highly sensitive to the root size (i.e., input parameter PatchDiam) and models were optimized when discrete PatchDiam ranges were specified for each trait. When examining roots in the four cardinal direction sectors, we observed differences between methodologies for length and number depending on root order but not volume. Conclusions We believe that TLS and QSM could facilitate rapid data collection, perhaps in situ, while providing quantitative accuracy, especially at the total root system level. If more detailed measures of root system architecture are desired, a TLS method would benefit from additional cans at differing perspectives, avoiding gravitational displacement to the extent possible, while subsampling roots by hand to calibrate and validate QSM models. Despite some unresolved logistical challenges, our results suggest that future use of TLS may hold promise for quantifying tree root system architecture in a rapid, replicable manner

The Burning Bush: Linking LiDAR-derived Shrub Architecture to Flammability

Light detection and ranging (LiDAR) and terrestrial laser scanning (TLS) sensors are powerful tools for characterizing vegetation structure and for constructing three-dimensional (3D) models of trees, also known as quantitative structural models (QSM). 3D models and structural traits derived from them provide valuable information for biodiversity conservation, forest management, and fire behavior modeling. However, vegetation studies and 3D modeling methodologies often only focus on the forest canopy, with little attention given to understory vegetation. In particular, 3D structural information of shrubs is limited or not included in fire behavior models. Yet, understory vegetation is an important component of forested ecosystems, and has an essential role in determining fire behavior. In this dissertation, I explored the use of TLS data and quantitative structure models to model shrub architecture in three related studies. In the first study, I present a semi-automated methodology for reconstructing architecturally different shrubs from TLS LiDAR. By investigating shrubs with different architectures and point cloud densities, I showed that occlusion, shrub complexity, and shape greatly affect the accuracy of shrub models. In my second study, I assessed the 3D architectural drivers of understory flammability by evaluating the use of architectural metrics derived from the TLS point cloud and 3D reconstructions of the shrubs. I focused on eight species common in the understory of the fire-prone longleaf pine forest ecosystem of the state of Florida, USA. I found a general tendency for each species to be associated with a unique combination of flammability and architectural traits. Novel shrub architectural traits were found to be complementary to the direct use of TLS data and improved flammability predictions. The inherent complexity of shrub architecture and uncertainty in the TLS point cloud make scaling up from an individual shrub to a plot level a challenging task. Therefore, in my third study, I explored the effects of lidar uncertainty on vegetation parameter prediction accuracy. I developed a practical workflow to create synthetic forest stands with varying densities, which were subsequently scanned with simulated terrestrial lidar. This provided data sets quantitatively similar to those created by real-world LiDAR measurements, but with the advantage of exact knowledge of the forest plot parameters, The results showed that the lidar scan location had a large effect on prediction accuracy. Furthermore, occlusion is strongly related to the sampling density and plot complexity. The results of this study illustrate the potential of non-destructive lidar approaches for quantifying shrub architectural traits. TLS, empirical quantitative structural models, and synthetic models provide valuable insights into shrub structure and fire behavior

A New Quantitative Approach to Tree Attributes Estimation Based on LiDAR Point Clouds

Tree-level information can be estimated based on light detection and ranging (LiDAR) point clouds. We propose to develop a quantitative structural model based on terrestrial laser scanning (TLS) point clouds to automatically and accurately estimate tree attributes and to detect real trees for the first time. This model is suitable for forest research where branches are involved in the calculation. First, the Adtree method was used to approximate the geometry of the tree stem and branches by fitting a series of cylinders. Trees were represented as a broad set of cylinders. Then, the end of the stem or all branches were closed. The tree model changed from a cylinder to a closed convex hull polyhedron, which was to reconstruct a 3D model of the tree. Finally, to extract effective tree attributes from the reconstructed 3D model, a convex hull polyhedron calculation method based on the tree model was defined. This calculation method can be used to extract wood (including tree stem and branches) volume, diameter at breast height (DBH) and tree height. To verify the accuracy of tree attributes extracted from the model, the tree models of 153 Chinese scholartrees from TLS data were reconstructed and the tree volume, DBH and tree height were extracted from the model. The experimental results show that the DBH and tree height extracted based on this model are in better consistency with the reference value based on field survey data. The bias, RMSE and R2 of DBH were 0.38 cm, 1.28 cm and 0.92, respectively. The bias, RMSE and R2 of tree height were −0.76 m, 1.21 m and 0.93, respectively. The tree volume extracted from the model is in better consistency with the reference value. The bias, root mean square error (RMSE) and determination coefficient (R2) of tree volume were −0.01236 m3, 0.03498 m3 and 0.96, respectively. This study provides a new model for nondestructive estimation of tree volume, above-ground biomass (AGB) or carbon stock based on LiDAR data

A new quantitative approach to tree attributes estimation based on LiDAR point clouds

Tree-level information can be estimated based on light detection and ranging (LiDAR) point clouds. We propose to develop a quantitative structural model based on terrestrial laser scanning (TLS) point clouds to automatically and accurately estimate tree attributes and to detect real trees for the first time. This model is suitable for forest research where branches are involved in the calculation. First, the Adtree method was used to approximate the geometry of the tree stem and branches by fitting a series of cylinders. Trees were represented as a broad set of cylinders. Then, the end of the stem or all branches were closed. The tree model changed from a cylinder to a closed convex hull polyhedron, which was to reconstruct a 3D model of the tree. Finally, to extract effective tree attributes from the reconstructed 3D model, a convex hull polyhedron calculation method based on the tree model was defined. This calculation method can be used to extract wood (including tree stem and branches) volume, diameter at breast height (DBH) and tree height. To verify the accuracy of tree attributes extracted from the model, the tree models of 153 Chinese scholartrees from TLS data were reconstructed and the tree volume, DBH and tree height were extracted from the model. The experimental results show that the DBH and tree height extracted based on this model are in better consistency with the reference value based on field survey data. The bias, RMSE and R2 of DBH were 0.38 cm, 1.28 cm and 0.92, respectively. The bias, RMSE and R2 of tree height were-0.76 m, 1.21 m and 0.93, respectively. The tree volume extracted from the model is in better consistency with the reference value. The bias, root mean square error (RMSE) and determination coefficient (R2) of tree volume were-0.01236 m3, 0.03498 m3 and 0.96, respectively. This study provides a new model for nondestructive estimation of tree volume, above-ground biomass (AGB) or carbon stock based on LiDAR data.Urban Data Scienc