Simulation of A Gastric Smooth Muscle Cell Model Utilizing the Electrophysiological Parameters of Colon Cell

Purpose: Mathematical simulating and computer modeling of cells in organs help to better understand cells' interactions and tissues' functions. The purpose of this paper was to model and simulate the excitable membrane of gastric cells. In this simulation, the current physiological functional descriptions of the gastric cells have been used, and at the same time, the electrophysiological characteristics of similar cells in the gastrointestinal tract have also been considered. Materials and Methods: To obtain a mathematical model for the stomach Smooth Muscle Cells (SMCs), the properties and electrophysiological parameters from the SMCs in the colon were used in the simulation of the stomach SMCs. Using the sensitivity analysis method, the effective parameters and values for simulating the electrophysiological behavior of the excitable gastric cell membrane were obtained for different phases of slow-wave (such as Depolarization, Spike, Plateau, Repolarization, and Rest). Also, the Action Potential Duration (APDs) method in four modes of 10, 20, 50, and 90 percent of APDs was used to evaluate the estimation of the effect of sensitivity analysis on the slow-wave of the studied cells. Results: The findings showed that the greatest effect of the stimulation current parameters was on the slow-wave duration and frequency. In addition, the greatest effect of ion channel parameters was observed on the plateau_phase in the slow-wave. Based on these methods, the resulting slow-wave pattern and its frequency (2.8 cycles per min) were in line with the experimental observations for gastric SMCs. Conclusion: The mathematical model obtained from the model of colon SMCs accurately represented the electrophysiological behavior of the stomach cells

Advances in Bioengineering

The technological approach and the high level of innovation make bioengineering extremely dynamic and this forces researchers to continuous updating. It involves the publication of the results of the latest scientific research. This book covers a wide range of aspects and issues related to advances in bioengineering research with a particular focus on innovative technologies and applications. The book consists of 13 scientific contributions divided in four sections: Materials Science; Biosensors. Electronics and Telemetry; Light Therapy; Computing and Analysis Techniques

Ion camera development for real–time acquisition of localised pH responses using the CMOS based 64×64–pixel ISFET sensor array technology

This thesis presents the development and test of an integrated ion camera chip for monitoring highly localised ion fluxes of electrochemical processes using an ion sensitive sensor array. Ionic concentration fluctuations are shown to travel across the sensor array as a result of citric acid injection and the BZ-reaction. The imaging capability of non-equilibrium chemical activities is also demonstrated monitoring self-assembling micrometre sized polyoxometalate tubular and membranous architectures. The sufficient spatial resolution for the visualisation of the 10-60 µm wide growing trajectories is provided by the dense sensor array containing 64×64 pixels. In the case of citric acid injection and the BZ-reaction the ion camera chip is shown to be able to resolve pH differences with resolution as low as the area of one pixel. As a result of the transient and volatile ionic fluxes high time resolution is required, thus the signal capturing can be performed in real.time at the maximum sampling rate of 40 µs per pixel, 10.2 ms per array. The extracted sensor data are reconstructed into ionic images and thus the ionic activities can be displayed as individual figures as well as continuous video recordings. This chip is the first prototype in the envisioned establishment of a fully automated CMOS based ion camera system which would be able to image the invisible activity of ions using a single microchip. In addition the capability of detecting ultra-low level pH oscillations in the extracellular space is demonstrated using cells of the slime mould organism. The detected pH oscillations with extent of ~0.022 pH furthermore raise the potential for observing fluctuations of ion currents in cell based tissue environments. The intrinsic noise of the sensor devices are measured to observe noise effect on the detected low level signals. It is experimentally shown that the used ion sensitive circuits, similarly to CMOS, also demonstrate 1/f noise. In addition the reference bias and pH sensitivity of the measured noise is confirmed. Corresponding to the measurement results the noise contribution is approximated with a 28.2 µV peak-to-peak level and related to the 450 µV �+/- 70 µV peak-to-peak oscillations amplitudes of the slime mould. Thus a maximum intrinsic noise contribution of 6.2 �+/- 1.2 % is calculated. A H+ flickering hypothesis is also presented that correlates the pH fluctuations on the surface of the device with the intrinsic 1/f noise. The ion camera chip was fabricated in an unmodified 4-metal 0.35 µm CMOS process and the ionic imaging technology was based on a 64�×64-pixel ion sensitive field effect transistor (ISFET) array. The high-speed and synchronous operation of the 4096 ISFET sensors occupying 715.8×715.8 µm space provided a spatial resolution as low as one pixel. Each pixel contained 4 transistors with 10.2×10.2 µm layout dimensions and the pixels were separated by a 1 µm separation gap. The ion sensitive silicon nitride based passivation layer was in contact with the floating gates of the ISFET sensors. It allowed the capacitive measurements of localised changes in the ionic concentrations, e.g. pH, pNa, on the surface of the chip. The device showed an average ionic sensitivity of 20 mV/pH and 9 mV/pNa. The packaging and encapsulation was carried out using PGA-100 chip carriers and two-component epoxies. Custom designed printed circuit boards (PCBs) were used to provide interface between the ISFET array chip and the data acquisition system. The data acquisition and extraction part of the developed software system was based on LabVIEW, the data processing was carried out on Matlab platform

Life Sciences Program Tasks and Bibliography

This document includes information on all peer reviewed projects funded by the Office of Life and Microgravity Sciences and Applications, Life Sciences Division during fiscal year 1995. Additionally, this inaugural edition of the Task Book includes information for FY 1994 programs. This document will be published annually and made available to scientists in the space life sciences field both as a hard copy and as an interactive Internet web pag

Reports to the President

A compilation of annual reports for the 1999-2000 academic year, including a report from the President of the Massachusetts Institute of Technology, as well as reports from the academic and administrative units of the Institute. The reports outline the year's goals, accomplishments, honors and awards, and future plans