A Clustering Algorithm Based on an Ensemble of Dissimilarities: An Application in the Bioinformatics Domain

Clustering algorithms such as k-means depend heavily on choosing an appropriate distance metric that reflect accurately the object proximities. A wide range of dissimilarities may be defined that often lead to different clustering results. Choosing the best dissimilarity is an ill-posed problem and learning a general distance from the data is a complex task, particularly for high dimensional problems. Therefore, an appealing approach is to learn an ensemble of dissimilarities. In this paper, we have developed a semi-supervised clustering algorithm that learns a linear combination of dissimilarities considering incomplete knowledge in the form of pairwise constraints. The minimization of the loss function is based on a robust and efficient quadratic optimization algorithm. Besides, a regularization term is considered that controls the complexity of the distance metric learned avoiding overfitting. The algorithm has been applied to the identification of tumor samples using the gene expression profiles, where domain experts provide often incomplete knowledge in the form of pairwise constraints. We report that the algorithm proposed outperforms a standard semi-supervised clustering technique available in the literature and clustering results based on a single dissimilarity. The improvement is particularly relevant for applications with high level of noise

Composite Kernel Optimization in Semi-Supervised Metric

Machine-learning solutions to classification, clustering and matching problems critically depend on the adopted metric, which in the past was selected heuristically. In the last decade, it has been demonstrated that an appropriate metric can be learnt from data, resulting in superior performance as compared with traditional metrics. This has recently stimulated a considerable interest in the topic of metric learning, especially using kernel functions, which map data to feature spaces with enhanced class separability, and implicitly define a new metric in the original feature space. The formulation of the problem of metric learning depends on the supervisory information available for the task. In this paper, we focus on semi-supervised kernel based distance metric learning where the training data set is unlabelled, with the exception of a small subset of pairs of points labelled as belonging to the same class (cluster) or different classes (clusters). The proposed method involves creating a pool of kernel functions. The corresponding kernels matrices are first clustered to remove redundancy in representation. A composite kernel constructed from the kernel clustering result is then expanded into an orthogonal set of basis functions. The mixing parameters of this expansion are then optimised using point similarity and dissimilarity information conveyed by the labels. The proposed method is evaluated on synthetic and real data sets. The results show the merit of using similarity and dissimilarity information jointly as compared to using just the similarity information, and the superiority of the proposed method over all the recently introduced metric learning approaches

Subspace Representations and Learning for Visual Recognition

Pervasive and affordable sensor and storage technology enables the acquisition of an ever-rising amount of visual data. The ability to extract semantic information by interpreting, indexing and searching visual data is impacting domains such as surveillance, robotics, intelligence, human- computer interaction, navigation, healthcare, and several others. This further stimulates the investigation of automated extraction techniques that are more efficient, and robust against the many sources of noise affecting the already complex visual data, which is carrying the semantic information of interest. We address the problem by designing novel visual data representations, based on learning data subspace decompositions that are invariant against noise, while being informative for the task at hand. We use this guiding principle to tackle several visual recognition problems, including detection and recognition of human interactions from surveillance video, face recognition in unconstrained environments, and domain generalization for object recognition.;By interpreting visual data with a simple additive noise model, we consider the subspaces spanned by the model portion (model subspace) and the noise portion (variation subspace). We observe that decomposing the variation subspace against the model subspace gives rise to the so-called parity subspace. Decomposing the model subspace against the variation subspace instead gives rise to what we name invariant subspace. We extend the use of kernel techniques for the parity subspace. This enables modeling the highly non-linear temporal trajectories describing human behavior, and performing detection and recognition of human interactions. In addition, we introduce supervised low-rank matrix decomposition techniques for learning the invariant subspace for two other tasks. We learn invariant representations for face recognition from grossly corrupted images, and we learn object recognition classifiers that are invariant to the so-called domain bias.;Extensive experiments using the benchmark datasets publicly available for each of the three tasks, show that learning representations based on subspace decompositions invariant to the sources of noise lead to results comparable or better than the state-of-the-art