FragViz: visualization of fragmented networks

BACKGROUND Researchers in systems biology use network visualization to summarize the results of their analysis. Such networks often include unconnected components, which popular network alignment algorithms place arbitrarily with respect to the rest of the network. This can lead to misinterpretations due to the proximity of otherwise unrelated elements. RESULTS We propose a new network layout optimization technique called FragViz which can incorporate additional information on relations between unconnected network components. It uses a two-step approach by first arranging the nodes within each of the components and then placing the components so that their proximity in the network corresponds to their relatedness. In the experimental study with the leukemia gene networks we demonstrate that FragViz can obtain network layouts which are more interpretable and hold additional information that could not be exposed using classical network layout optimization algorithms. CONCLUSIONS Network visualization relies on computational techniques for proper placement of objects under consideration. These algorithms need to be fast so that they can be incorporated in responsive interfaces required by the explorative data analysis environments. Our layout optimization technique FragViz meets these requirements and specifically addresses the visualization of fragmented networks, for which standard algorithms do not consider similarities between unconnected components. The experiments confirmed the claims on speed and accuracy of the proposed solution

Memetic algorithms for ontology alignment

2011 - 2012Semantic interoperability represents the capability of two or more systems to meaningfully and accurately interpret the exchanged data so as to produce useful results. It is an essential feature of all distributed and open knowledge based systems designed for both e-government and private businesses, since it enables machine interpretation, inferencing and computable logic. Unfortunately, the task of achieving semantic interoperability is very difficult because it requires that the meanings of any data must be specified in an appropriate detail in order to resolve any potential ambiguity. Currently, the best technology recognized for achieving such level of precision in specification of meaning is represented by ontologies. According to the most frequently referenced definition [1], an ontology is an explicit specification of a conceptualization, i.e., the formal specification of the objects, concepts, and other entities that are presumed to exist in some area of interest and the relationships that hold them [2]. However, different tasks or different points of view lead ontology designers to produce different conceptualizations of the same domain of interest. This means that the subjectivity of the ontology modeling results in the creation of heterogeneous ontologies characterized by terminological and conceptual discrepancies. Examples of these discrepancies are the use of different words to name the same concept, the use of the same word to name different concepts, the creation of hierarchies for a specific domain region with different levels of detail and so on. The arising so-called semantic heterogeneity problem represents, in turn, an obstacle for achieving semantic interoperability... [edited by author]XI n.s

EG-ICE 2021 Workshop on Intelligent Computing in Engineering

The 28th EG-ICE International Workshop 2021 brings together international experts working at the interface between advanced computing and modern engineering challenges. Many engineering tasks require open-world resolutions to support multi-actor collaboration, coping with approximate models, providing effective engineer-computer interaction, search in multi-dimensional solution spaces, accommodating uncertainty, including specialist domain knowledge, performing sensor-data interpretation and dealing with incomplete knowledge. While results from computer science provide much initial support for resolution, adaptation is unavoidable and most importantly, feedback from addressing engineering challenges drives fundamental computer-science research. Competence and knowledge transfer goes both ways

Dynamics in Logistics

This open access book highlights the interdisciplinary aspects of logistics research. Featuring empirical, methodological, and practice-oriented articles, it addresses the modelling, planning, optimization and control of processes. Chiefly focusing on supply chains, logistics networks, production systems, and systems and facilities for material flows, the respective contributions combine research on classical supply chain management, digitalized business processes, production engineering, electrical engineering, computer science and mathematical optimization. To celebrate 25 years of interdisciplinary and collaborative research conducted at the Bremen Research Cluster for Dynamics in Logistics (LogDynamics), in this book hand-picked experts currently or formerly affiliated with the Cluster provide retrospectives, present cutting-edge research, and outline future research directions

EG-ICE 2021 Workshop on Intelligent Computing in Engineering

The 28th EG-ICE International Workshop 2021 brings together international experts working at the interface between advanced computing and modern engineering challenges. Many engineering tasks require open-world resolutions to support multi-actor collaboration, coping with approximate models, providing effective engineer-computer interaction, search in multi-dimensional solution spaces, accommodating uncertainty, including specialist domain knowledge, performing sensor-data interpretation and dealing with incomplete knowledge. While results from computer science provide much initial support for resolution, adaptation is unavoidable and most importantly, feedback from addressing engineering challenges drives fundamental computer-science research. Competence and knowledge transfer goes both ways