Checkpointing as a Service in Heterogeneous Cloud Environments

A non-invasive, cloud-agnostic approach is demonstrated for extending existing cloud platforms to include checkpoint-restart capability. Most cloud platforms currently rely on each application to provide its own fault tolerance. A uniform mechanism within the cloud itself serves two purposes: (a) direct support for long-running jobs, which would otherwise require a custom fault-tolerant mechanism for each application; and (b) the administrative capability to manage an over-subscribed cloud by temporarily swapping out jobs when higher priority jobs arrive. An advantage of this uniform approach is that it also supports parallel and distributed computations, over both TCP and InfiniBand, thus allowing traditional HPC applications to take advantage of an existing cloud infrastructure. Additionally, an integrated health-monitoring mechanism detects when long-running jobs either fail or incur exceptionally low performance, perhaps due to resource starvation, and proactively suspends the job. The cloud-agnostic feature is demonstrated by applying the implementation to two very different cloud platforms: Snooze and OpenStack. The use of a cloud-agnostic architecture also enables, for the first time, migration of applications from one cloud platform to another.Comment: 20 pages, 11 figures, appears in CCGrid, 201

Resource-Efficient Replication and Migration of Virtual Machines.

Continuous replication and live migration of Virtual Machines (VMs) are two vital tools in a virtualized environment, but they are resource-expensive. Continuously replicating a VM's checkpointed state to a backup host maintains high-availability (HA) of the VM despite host failures, but checkpoint replication can generate significant network traffic. Each replicated VM also incurs a 100% memory overhead, since the backup unproductively reserves the same amount of memory to hold the redundant VM state. Live migration, though being widely used for load-balancing, power-saving, etc., can also generate excessive network traffic, by transferring VM state iteratively. In addition, it can incur a long completion time and degrade application performance. This thesis explores ways to replicate VMs for HA using resources efficiently, and to migrate VMs fast, with minimal execution disruption and using resources efficiently. First, we investigate the tradeoffs in using different compression methods to reduce the network traffic of checkpoint replication in a HA system. We evaluate gzip, delta and similarity compressions based on metrics that are specifically important in a HA system, and then suggest guidelines for their selection. Next, we propose HydraVM, a storage-based HA approach that eliminates the unproductive memory reservation made in backup hosts. HydraVM maintains a recent image of a protected VM in a shared storage by taking and consolidating incremental VM checkpoints. When a failure occurs, HydraVM quickly resumes the execution of a failed VM by loading a small amount of essential VM state from the storage. As the VM executes, the VM state not yet loaded is supplied on-demand. Finally, we propose application-assisted live migration, which skips transfer of VM memory that need not be migrated to execute running applications at the destination. We develop a generic framework for the proposed approach, and then use the framework to build JAVMM, a system that migrates VMs running Java applications skipping transfer of garbage in Java memory. Our evaluation results show that compared to Xen live migration, which is agnostic of running applications, JAVMM can reduce the completion time, network traffic and application downtime caused by Java VM migration, all by up to over 90%.PhDComputer Science and EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/111575/1/karenhou_1.pd

Checkpointing of parallel applications in a Grid environment

The Grid environment is generic, heterogeneous, and dynamic with lots of unreliable resources making it very exposed to failures. The environment is unreliable because it is geographically dispersed involving multiple autonomous administrative domains and it is composed of a large number of components. Examples of failures in the Grid environment can be: application crash, Grid node crash, network failures, and Grid system component failures. These types of failures can affect the execution of parallel/distributed application in the Grid environment and so, protections against these faults are crucial. Therefore, it is essential to develop efficient fault tolerant mechanisms to allow users to successfully execute Grid applications. One of the research challenges in Grid computing is to be able to develop a fault tolerant solution that will ensure Grid applications are executed reliably with minimum overhead incurred. While checkpointing is the most common method to achieve fault tolerance, there is still a lot of work to be done to improve the efficiency of the mechanism. This thesis provides an in-depth description of a novel solution for checkpointing parallel applications executed on a Grid. The checkpointing mechanism implemented allows to checkpoint an application at regions where there is no interprocess communication involved and therefore reducing the checkpointing overhead and checkpoint size

What does fault tolerant Deep Learning need from MPI?

Deep Learning (DL) algorithms have become the de facto Machine Learning (ML) algorithm for large scale data analysis. DL algorithms are computationally expensive - even distributed DL implementations which use MPI require days of training (model learning) time on commonly studied datasets. Long running DL applications become susceptible to faults - requiring development of a fault tolerant system infrastructure, in addition to fault tolerant DL algorithms. This raises an important question: What is needed from MPI for de- signing fault tolerant DL implementations? In this paper, we address this problem for permanent faults. We motivate the need for a fault tolerant MPI specification by an in-depth consideration of recent innovations in DL algorithms and their properties, which drive the need for specific fault tolerance features. We present an in-depth discussion on the suitability of different parallelism types (model, data and hybrid); a need (or lack thereof) for check-pointing of any critical data structures; and most importantly, consideration for several fault tolerance proposals (user-level fault mitigation (ULFM), Reinit) in MPI and their applicability to fault tolerant DL implementations. We leverage a distributed memory implementation of Caffe, currently available under the Machine Learning Toolkit for Extreme Scale (MaTEx). We implement our approaches by ex- tending MaTEx-Caffe for using ULFM-based implementation. Our evaluation using the ImageNet dataset and AlexNet, and GoogLeNet neural network topologies demonstrates the effectiveness of the proposed fault tolerant DL implementation using OpenMPI based ULFM

BlobCR: Virtual Disk Based Checkpoint-Restart for HPC Applications on IaaS Clouds

International audienceInfrastructure-as-a-Service (IaaS) cloud computing is gaining significant interest in industry and academia as an alternative platform for running HPC applications. Given the need to provide fault tolerance, support for suspend-resume and offline migration, an efficient Checkpoint-Restart mechanism becomes paramount in this context. We propose BlobCR, a dedicated checkpoint repository that is able to take live incremental snapshots of the whole disk attached to the virtual machine (VM) instances. BlobCR aims to minimize the performance overhead of checkpointing by persisting VM disk snapshots asynchronously in the background using a low overhead technique we call selective copy-on-write. It includes support for both application-level and process-level checkpointing, as well as support to roll back file system changes. Experiments at large scale demonstrate the benefits of our proposal both in synthetic settings and for a real-life HPC application