Collaborative Artificial Intelligence Algorithms for Medical Imaging Applications

In this dissertation, we propose novel machine learning algorithms for high-risk medical imaging applications. Specifically, we tackle current challenges in radiology screening process and introduce cutting-edge methods for image-based diagnosis, detection and segmentation. We incorporate expert knowledge through eye-tracking, making the whole process human-centered. This dissertation contributes to machine learning, computer vision, and medical imaging research by: 1) introducing a mathematical formulation of radiologists level of attention, and sparsifying their gaze data for a better extraction and comparison of search patterns. 2) proposing novel, local and global, image analysis algorithms. Imaging based diagnosis and pattern analysis are high-risk Artificial Intelligence applications. A standard radiology screening procedure includes detection, diagnosis and measurement (often done with segmentation) of abnormalities. We hypothesize that having a true collaboration is essential for a better control mechanism, in such applications. In this regard, we propose to form a collaboration medium between radiologists and machine learning algorithms through eye-tracking. Further, we build a generic platform consisting of novel machine learning algorithms for each of these tasks. Our collaborative algorithm utilizes eye tracking and includes an attention model and gaze-pattern analysis, based on data clustering and graph sparsification. Then, we present a semi-supervised multi-task network for local analysis of image in radiologists\u27 ROIs, extracted in the previous step. To address missing tumors and analyze regions that are completely missed by radiologists during screening, we introduce a detection framework, S4ND: Single Shot Single Scale Lung Nodule Detection. Our proposed detection algorithm is specifically designed to handle tiny abnormalities in lungs, which are easy to miss by radiologists. Finally, we introduce a novel projective adversarial framework, PAN: Projective Adversarial Network for Medical Image Segmentation, for segmenting complex 3D structures/organs, which can be beneficial in the screening process by guiding radiologists search areas through segmentation of desired structure/organ

Modelling the interpretation of digital mammography using high order statistics and deep machine learning

Visual search is an inhomogeneous, yet efficient sampling process accomplished by the saccades and the central (foveal) vision. Areas that attract the central vision have been studied for errors in interpretation of medical images. In this study, we extend existing visual search studies to understand features of areas that receive direct visual attention and elicit a mark by the radiologist (True and False Positive decisions) from those that elicit a mark but were captured by the peripheral vision. We also investigate if there are any differences between these areas and those that are never fixated by radiologists. Extending these investigations, we further explore the possibility of modelling radiologists’ search behavior and their interpretation of mammograms using deep machine learning techniques. We demonstrated that energy profiles of foveated (FC), peripherally fixated (PC), and never fixated (NFC) areas are distinct. It was shown that FCs are selected on the basis of being most informative. Never fixated regions were found to be least informative. Evidences that energy profiles and dwell time of these areas influence radiologists’ decisions (and confidence in such decisions) were also shown. High-order features provided additional information to the radiologists, however their effect on decision (and confidence in such decision) was not significant. We also showed that deep-convolution neural network can successfully be used to model radiologists’ attentional level, decisions and confidence in their decisions. High accuracy and high agreement (between true and predicted values) in such predictions can be achieved in modelling attentional level (accuracy: 0.90, kappa: 0.82) and decisions (accuracy: 0.92, kappa: 0.86) of radiologists. Our results indicated that an ensembled model for radiologist’s search behavior and decision can successfully be built. Convolution networks failed to model missed cancers however

Predicting radiologists' gaze with computational saliency models in mammogram reading

Previous studies have shown that there is a strong correlation between radiologists' diagnoses and their gaze when reading medical images. The extent to which gaze is attracted by content in a visual scene can be characterised as visual saliency. There is a potential for the use of visual saliency in computer-aided diagnosis in radiology. However, little is known about what methods are effective for diagnostic images, and how these methods could be adapted to address specific applications in diagnostic imaging. In this study, we investigate 20 state-of-the-art saliency models including 10 traditional models and 10 deep learning-based models in predicting radiologists' visual attention while reading 196 mammograms. We found that deep learning-based models represent the most effective type of methods for predicting radiologists' gaze in mammogram reading; and that the performance of these saliency models can be significantly improved by transfer learning. In particular, an enhanced model can be achieved by pre-training the model on a large-scale natural image saliency dataset and then fine-tuning it on the target medical image dataset. In addition, based on a systematic selection of backbone networks and network architectures, we proposed a parallel multi-stream encoded model which outperforms the state-of-the-art approaches for predicting saliency of mammograms

Eye-tracking assistive technologies for individuals with amyotrophic lateral sclerosis

Amyotrophic lateral sclerosis, also known as ALS, is a progressive nervous system disorder that affects nerve cells in the brain and spinal cord, resulting in the loss of muscle control. For individuals with ALS, where mobility is limited to the movement of the eyes, the use of eye-tracking-based applications can be applied to achieve some basic tasks with certain digital interfaces. This paper presents a review of existing eye-tracking software and hardware through which eye-tracking their application is sketched as an assistive technology to cope with ALS. Eye-tracking also provides a suitable alternative as control of game elements. Furthermore, artificial intelligence has been utilized to improve eye-tracking technology with significant improvement in calibration and accuracy. Gaps in literature are highlighted in the study to offer a direction for future research