A Large Scale Dataset for the Evaluation of Ontology Matching Systems

Recently, the number of ontology matching techniques and systems has increased significantly. This makes the issue of their evaluation and comparison more severe. One of the challenges of the ontology matching evaluation is in building large scale evaluation datasets. In fact, the number of possible correspondences between two ontologies grows quadratically with respect to the numbers of entities in these ontologies. This often makes the manual construction of the evaluation datasets demanding to the point of being infeasible for large scale matching tasks. In this paper we present an ontology matching evaluation dataset composed of thousands of matching tasks, called TaxME2. It was built semi-automatically out of the Google, Yahoo and Looksmart web directories. We evaluated TaxME2 by exploiting the results of almost two dozen of state of the art ontology matching systems. The experiments indicate that the dataset possesses the desired key properties, namely it is error-free, incremental, discriminative, monotonic, and hard for the state of the art ontology matching systems. The paper has been accepted for publication in "The Knowledge Engineering Review", Cambridge Universty Press (ISSN: 0269-8889, EISSN: 1469-8005)

Ontology matching: state of the art and future challenges

shvaiko2013aInternational audienceAfter years of research on ontology matching, it is reasonable to consider several questions: is the field of ontology matching still making progress? Is this progress significant enough to pursue some further research? If so, what are the particularly promising directions? To answer these questions, we review the state of the art of ontology matching and analyze the results of recent ontology matching evaluations. These results show a measurable improvement in the field, the speed of which is albeit slowing down. We conjecture that significant improvements can be obtained only by addressing important challenges for ontology matching. We present such challenges with insights on how to approach them, thereby aiming to direct research into the most promising tracks and to facilitate the progress of the field

MultiFarm: A benchmark for multilingual ontology matching

In this paper we present the MultiFarm dataset, which has been designed as a benchmark for multilingual ontology matching. The MultiFarm dataset is composed of a set of ontologies translated in different languages and the corresponding alignments between these ontologies. It is based on the OntoFarm dataset, which has been used successfully for several years in the Ontology Alignment Evaluation Initiative (OAEI). By translating the ontologies of the OntoFarm dataset into eight different languages – Chinese, Czech, Dutch, French, German, Portuguese, Russian, and Spanish – we created a comprehensive set of realistic test cases. Based on these test cases, it is possible to evaluate and compare the performance of matching approaches with a special focus on multilingualism

Biomedical ontology alignment: An approach based on representation learning

While representation learning techniques have shown great promise in application to a number of different NLP tasks, they have had little impact on the problem of ontology matching. Unlike past work that has focused on feature engineering, we present a novel representation learning approach that is tailored to the ontology matching task. Our approach is based on embedding ontological terms in a high-dimensional Euclidean space. This embedding is derived on the basis of a novel phrase retrofitting strategy through which semantic similarity information becomes inscribed onto fields of pre-trained word vectors. The resulting framework also incorporates a novel outlier detection mechanism based on a denoising autoencoder that is shown to improve performance. An ontology matching system derived using the proposed framework achieved an F-score of 94% on an alignment scenario involving the Adult Mouse Anatomical Dictionary and the Foundational Model of Anatomy ontology (FMA) as targets. This compares favorably with the best performing systems on the Ontology Alignment Evaluation Initiative anatomy challenge. We performed additional experiments on aligning FMA to NCI Thesaurus and to SNOMED CT based on a reference alignment extracted from the UMLS Metathesaurus. Our system obtained overall F-scores of 93.2% and 89.2% for these experiments, thus achieving state-of-the-art results

Towards more Challenging Problems for Ontology Matching Tools

We motivate the need for challenging problems in the evaluation of ontology matching tools. To address this need, we propose mapping sets between well-known biomedical ontologies that are based on the UMLS Metathesaurus. These mappings could be used as a basis for a new track in future OAEI campaigns (http://oaei.ontologymatching.org/).
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