Generalized Separable Nonnegative Matrix Factorization

Nonnegative matrix factorization (NMF) is a linear dimensionality technique for nonnegative data with applications such as image analysis, text mining, audio source separation and hyperspectral unmixing. Given a data matrix $M$ and a factorization rank $r$, NMF looks for a nonnegative matrix $W$ with $r$ columns and a nonnegative matrix $H$ with $r$ rows such that $M \approx WH$. NMF is NP-hard to solve in general. However, it can be computed efficiently under the separability assumption which requires that the basis vectors appear as data points, that is, that there exists an index set $\mathcal{K}$ such that $W = M(:,\mathcal{K})$. In this paper, we generalize the separability assumption: We only require that for each rank-one factor $W(:,k)H(k,:)$ for $k=1,2,\dots,r$, either $W(:,k) = M(:,j)$ for some $j$ or $H(k,:) = M(i,:)$ for some $i$. We refer to the corresponding problem as generalized separable NMF (GS-NMF). We discuss some properties of GS-NMF and propose a convex optimization model which we solve using a fast gradient method. We also propose a heuristic algorithm inspired by the successive projection algorithm. To verify the effectiveness of our methods, we compare them with several state-of-the-art separable NMF algorithms on synthetic, document and image data sets.Comment: 31 pages, 12 figures, 4 tables. We have added discussions about the identifiability of the model, we have modified the first synthetic experiment, we have clarified some aspects of the contributio

On Restricted Nonnegative Matrix Factorization

Nonnegative matrix factorization (NMF) is the problem of decomposing a given nonnegative $n \times m$ matrix $M$ into a product of a nonnegative $n \times d$ matrix $W$ and a nonnegative $d \times m$ matrix $H$. Restricted NMF requires in addition that the column spaces of $M$ and $W$ coincide. Finding the minimal inner dimension $d$ is known to be NP-hard, both for NMF and restricted NMF. We show that restricted NMF is closely related to a question about the nature of minimal probabilistic automata, posed by Paz in his seminal 1971 textbook. We use this connection to answer Paz's question negatively, thus falsifying a positive answer claimed in 1974. Furthermore, we investigate whether a rational matrix $M$ always has a restricted NMF of minimal inner dimension whose factors $W$ and $H$ are also rational. We show that this holds for matrices $M$ of rank at most $3$ and we exhibit a rank-$4$ matrix for which $W$ and $H$ require irrational entries.Comment: Full version of an ICALP'16 pape

Descent methods for Nonnegative Matrix Factorization

In this paper, we present several descent methods that can be applied to nonnegative matrix factorization and we analyze a recently developped fast block coordinate method called Rank-one Residue Iteration (RRI). We also give a comparison of these different methods and show that the new block coordinate method has better properties in terms of approximation error and complexity. By interpreting this method as a rank-one approximation of the residue matrix, we prove that it \emph{converges} and also extend it to the nonnegative tensor factorization and introduce some variants of the method by imposing some additional controllable constraints such as: sparsity, discreteness and smoothness.Comment: 47 pages. New convergence proof using damped version of RRI. To appear in Numerical Linear Algebra in Signals, Systems and Control. Accepted. Illustrating Matlab code is included in the source bundl