Niche divergence and limits to expansion in the high polyploid Dianthus broteri complex

Niche evolution in plant polyploids remains controversial and evidence for alternative patterns has been reported. Using the autopolyploid Dianthus broteri complex (2×, 4×, 6× and 12×) as a model, we aimed to integrate three scenarios – competitive exclusion, recurrent origins of cytotypes and niche filling – into a single framework of polyploid niche evolution. We hypothesized that high polyploids would tend to evolve towards extreme niches when low ploidy cytotypes have nearly filled the niche space. We used several ecoinformatics and phylogenetic comparative analyses to quantify differences in the ecological niche of each cytotype and to evaluate alternative models of niche evolution. Each cytotype in this complex occupied a distinct ecological niche. The distributions were mainly constrained by soil characteristics, temperature and drought stress imposed by the Mediterranean climate. Tetraploids had the highest niche breadth and overlap due to their multiple origins, whereas the higher ploidy cytotypes were found in different, restricted, nonoverlapping niches. Niche evolution analyses suggested a scenario with one niche optimum for each ploidy, including the two independent tetraploid lineages.Our results suggest that the fate of nascent polyploids could not be predicted without accounting for phylogenetic relatedness, recurrent origins or the niche occupied by ancestors.Aridos La Melera S.L. (FIUS project 2234/0724

Evolution of Ecological Niche Breadth

How ecological niche breadth evolves is central to adaptation and speciation and has been a topic of perennial interest. Niche breadth evolution research has occurred within environmental, ecological, evolutionary, and biogeographical contexts, and although some generalities have emerged, critical knowledge gaps exist. Performance breadth trade-offs, although long invoked, may not be common determinants of niche breadth evolution or limits. Niche breadth can expand or contract from specialist or generalist lineages, and so specialization need not be an evolutionary dead end. Whether niche breadth determines diversification and distribution breadth and how niche breadth is partitioned among individuals and populations within a species are important but particularly understudied topics. Molecular genetic and phylogenetic techniques have greatly expanded understanding of niche breadth evolution, but field studies of how niche breadth evolves are essential for providing mechanistic details and allowing the development of comprehensive theory and improved prediction of biological responses under global change. </jats:p

Macro-Climatic Distribution Limits Show Both Niche Expansion and Niche Specialization among C4 Panicoids

Grasses are ancestrally tropical understory species whose current dominance in warm open habitats is linked to the evolution of C4 photosynthesis. C4 grasses maintain high rates of photosynthesis in warm and water stressed environments, and the syndrome is considered to induce niche shifts into these habitats while adaptation to cold ones may be compromised. Global biogeographic analyses of C4 grasses have, however, concentrated on diversity patterns, while paying little attention to distributional limits. Using phylogenetic contrast analyses, we compared macro-climatic distribution limits among ~1300 grasses from the subfamily Panicoideae, which includes 4/5 of the known photosynthetic transitions in grasses. We explored whether evolution of C4 photosynthesis correlates with niche expansions, niche changes, or stasis at subfamily level and within the two tribes Paniceae and Paspaleae. We compared the climatic extremes of growing season temperatures, aridity, and mean temperatures of the coldest months. We found support for all the known biogeographic distribution patterns of C4 species, these patterns were, however, formed both by niche expansion and niche changes. The only ubiquitous response to a change in the photosynthetic pathway within Panicoideae was a niche expansion of the C4 species into regions with higher growing season temperatures, but without a withdrawal from the inherited climate niche. Other patterns varied among the tribes, as macro-climatic niche evolution in the American tribe Paspaleae differed from the pattern supported in the globally distributed tribe Paniceae and at family level.Fil: Aagesen, Lone. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Biganzoli, Fernando. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Métodos Cuantitativos y Sistemas de Información; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Bena, María Julia. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Godoy Bürki, Ana Carolina. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Reinheimer, Renata. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; ArgentinaFil: Zuloaga, Fernando Omar. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; Argentin

a variational approach to niche construction

In evolutionary biology, niche construction is sometimes described as a genuine evolutionary process whereby organisms, through their activities and regulatory mechanisms, modify their environment such as to steer their own evolutionary trajectory, and that of other species. There is ongoing debate, however, on the extent to which niche construction ought to be considered a bona fide evolutionary force, on a par with natural selection. Recent formulations of the variational free-energy principle as applied to the life sciences describe the properties of living systems, and their selection in evolution, in terms of variational inference. We argue that niche construction can be described using a variational approach. We propose new arguments to support the niche construction perspective, and to extend the variational approach to niche construction to current perspectives in various scientific fields

Phylogenetic patterns of diversification across ecological niches in the African tree genus Guibourtia

Adaptive evolution is thought to be a major driver of organism diversification but the link between phenotypic traits and environmental niche remains little documented in tropical trees. Moreover, the respective roles of phylogenetic inertia and convergent evolution in shaping environmental niche and phenotypic trait similarity among related plant taxa is not well understood. Indeed, a correlation between species traits and species environmental niche among a sample of species may result from (1) convergent evolution if different environmental conditions have selected different sets of traits, or (2) phylogenetic inertia if niche and morphological differences between species are simply function of their phylogenetic divergence, in which case the trait-niche correlation does not imply any direct causal link. The aim of this study is to understand the relationships between environmental niche divergence and morphological divergence among congeneric species while accounting for phylogenetic inertia. This issue was addressed with the timber tree genus Guibourtia Benn. (Leguminosae, Detarioideae) which contains 13 African species occupying various forest habitat types, from rain forest to dry woodlands, with different climate and soil conditions. To this end, we combined morphological data with recent ecological niche modelling and used a highly resolved plastid phylogeny of the 13 African Guibourtia species. First, we demonstrated phylogenetic signals in both morphological traits (Mantel test between phylogenetic and morphological distances between species: r = 0.24, p = 0.031) and environmental niches (Mantel test between phylogenetic and niche distances between species: r = 0.23, p = 0.025). Second, we found a significant correlation between morphology and niche, at least between some of their respective dimensions (Mantel's r = 0.32, p = 0.013), even after accounting for phylogenetic inertia (Phylogenetic Independent Contrast: r = 0.69, p = 0.018). This correlation occurred between some leaflet and flower traits and solar radiation, relative humidity, precipitations and temperature range. Our results demonstrate the convergent evolution of some morphological traits in response to climatic factors in congeneric tree species and highlight the action of selective forces, along with neutral ones, in shaping the divergence between tropical plants

The Pleiotropic Effects of Beneficial Mutations of Adapted Escherichia coli Populations

Mutations that improve fitness in one environment can often be beneficial, deleterious, or neutral in alternative environments. When a single mutation effects fitness in multiple environments, it is said to be a pleiotropic, which can have important consequences for niche specialization, niche expansion, speciation, and even extinction in the face of environmental change. While previous studies have revealed that pleiotropy is nearly universal, the role of adaptive history in the spectrum of pleiotropic effects has yet to undergo detailed experimental observation. Using experimental evolution we gathered beneficial mutations in a previously adapted strain of Escherichia coli growing in the same common substrate over hundreds of generations. We then tested the effects of these mutations in multiple alternative environments and compared their fitness to the ancestor. We found that the magnitude of the effects correlates positively with the similarity of resources to glucose, indicating that selective history has an influence in the distribution of beneficial mutations. These findings broaden our understanding of the effects of history on pleiotropy, and may provide answers into how evolution in a constant environment influences ecological niche formation and constraint

Area, climate heterogeneity, and the response of climate niches to ecological opportunity in island radiations of Anolis lizards

Aim Rates of climate niche evolution underlie numerous fundamental ecological processes and patterns. However, while climate niche conservatism varies markedly among regions and clades, the source of this variation remains poorly understood. We tested whether ecological opportunity can stimulate radiation within climate niche space at biogeographic scales, predicting that rates of climate niche evolution will scale with geographic area and climate heterogeneity. Location Caribbean Methods We quantified two temperature axes (mean temperature and temperature seasonality of species' localities) of the climate niche for 130 Anolis species on Cuba, Hispaniola, Puerto Rico, Jamaica and the northern and southern Lesser Antilles. Using a species-level phylogeny, we fitted macroevolutionary models that either constrained rates of climate niche evolution or allowed them to vary among regions. Next, we regressed region-specific evolutionary rates against area, species richness and climate heterogeneity. We evaluated whether results were robust to uncertainty in phylogenetic and biogeographic reconstructions and the assumed mode of evolution. Results For both niche axes, an Ornstein-Uhlenbeck model that allowed the net rate of evolution (σ2) to vary among island groups fit the data considerably better than a single-rate Brownian motion model. Nagelkerke pseudo-R2 values of the fit of these OU models to mean temperature and seasonality axes were 0.43 and 0.66, respectively. Evolutionary rates for both axes were higher in larger areas, which also have more species. Only the rate of mean occupied temperature evolution was positively related to climate heterogeneity, and only after accounting for region size. Conclusions Rates of climate niche evolution scale consistently with the area available for radiation, but responses to climate heterogeneity vary among niche axes. For the mean temperature axis, climate heterogeneity generated additional opportunities for radiation, but for seasonality it did not. Overall, the physical setting in which a clade diversifies can influence where it falls on the evolutionary continuum, from climate niche conservatism to radiation

Formation of iron sulfide at faecal pellets and other microniches within suboxic surface sediment.

Faecal pellet deposition and bioturbation may lead to heterogeneously distributed particles of localized highly reactive organic matter (microniches) being present below the oxygen penetration depth. Where O2, NO3-, and Fe/Mn oxyhydroxides become depleted within these microniches or where they exist in zones of sulfate reduction, significant localized peaks in sulfide concentration can occur. These discrete zones of sulfide evolution can cause formation of iron sulfides that would not be predicted by analysis of the ‘bulk’ sediment. Using a reaction-transport model developed specifically for investigating spherical microniches, and incorporating 3D diffusion, we investigated how the rate constants of organic matter (OM) degradation, particle porosity and niche lifetime, affect dissolved sulfide and iron concentrations, and formation of iron sulfide at such niches. For all of the modelled scenarios the saturation index for iron sulfide is positive, indicating favourable conditions for FeS precipitation in all niches. Those simulations within the microniche lifetime range of 2.5 to 5 days gave comparable concentration ratios of sulfide to iron in solution within the niche to experimentally observed values. Our model results provide insight into the mechanisms of preservation of OM, including soft tissue, in the paleo record, by predicting the conditions that result in preferential deposition of precipitates at the edge of microniches. Decreases in porosity, shorter niche lifetimes and increases in OM degradation rate constants, all tend to increase the likelihood that FeS precipitation will preferentially occur at the edges of a niche, rather than uniformly throughout the niche volume