Coarse-grained molecular dynamics simulation of water diffusion in the presence of carbon nanotubes

Computational modeling of the translational diffusion of water molecules in anisotropic environments entails vital relevance to understand correctly the information contained in the magnetic resonance images weighted in diffusion (DWI) and of the diffusion tensor images (DTI). In the present work we investigated the validity, strengths and weaknesses of a coarse-grained (CG) model based on the MARTINI force field to simulate water diffusion in a medium containing carbon nanotubes (CNTs) as models of anisotropic water diffusion behavior. We show that water diffusion outside the nanotubes follows Ficḱs law, while water diffusion inside the nanotubes is not described by a Ficḱs behavior. We report on the influence on water diffusion of various parameters such as length and concentration of CNTs, comparing the CG results with those obtained from the more accurate classic force field calculation, like the all-atom approach.1.674 JCR (2015) Q2, 45/104 Computer science, interdisciplinary applications, 20/56 Mathematical & computational biology; Q3, 54/77 Biochemical research methods, 15/26 Crystallography; Q4, 227/289 Biochemistry & molecular biologyUE