Cross-link governed dynamics of biopolymer networks

Cytoskeletal networks of biopolymers are cross-linked by a variety of proteins. Experiments have shown that dynamic cross-linking with physiological linker proteins leads to complex stress relaxation and enables network flow at long times. We present a model for the mechanical properties of transient networks. By a combination of simulations and analytical techniques we show that a single microscopic timescale for cross-linker unbinding leads to a broad spectrum of macroscopic relaxation times, resulting in a weak power-law dependence of the shear modulus on frequency. By performing rheological experiments, we demonstrate that our model quantitatively describes the frequency behavior of actin network cross-linked with $\alpha$-Actinin-$4$ over four decades in frequency.Comment: 4 page

Molecular model for HNBR with tunable cross-link density

We introduce a chemically-inspired, all-atom model of HNBR and assess its perfor- mance by computing the mass density and glass transition temperature as a function of cross-link density in the structure. Our HNBR structures are created by a procedure that mimics the real process used to produce HNBR, i.e., saturation of the carbon- carbon double bonds in NBR, either by hydrogenation or by cross-linking. The atomic interactions are described by the all-atom “Optimized Potentials for Liquid Simula- tions" (OPLS-AA). In this paper we: first assess the use of OPLS-AA in our models, especially using NBR bulk properties, and second evaluate the validity of the proposed model for HNBR by investigating mass density and glass transition as a function of the tunable cross-link density. Experimental densities are reproduced within 3% for both elastomers, and qualitatively correct trends in the glass transition temperature as a function of the monomer composition and cross-link density are obtained

Force-extension relation of cross-linked anisotropic polymer networks

Cross-linked polymer networks with orientational order constitute a wide class of soft materials and are relevant to biological systems (e.g., F-actin bundles). We analytically study the nonlinear force-extension relation of an array of parallel-aligned, strongly stretched semiflexible polymers with random cross-links. In the strong stretching limit, the effect of the cross-links is purely entropic, independent of the bending rigidity of the chains. Cross-links enhance the differential stretching stiffness of the bundle. For hard cross-links, the cross-link contribution to the force-extension relation scales inversely proportional to the force. Its dependence on the cross-link density, close to the gelation transition, is the same as that of the shear modulus. The qualitative behavior is captured by a toy model of two chains with a single cross-link in the middle.Comment: 7 pages, 4 figure

Fracture energy of gels

To clarify effects of crack speed and cross-link density on fracture energy of acrylamide gels, we evaluated the roughness of the fracture surface and measured the fracture energy taking into account the roughness. The fracture energy increases linearly with crack speed $V$ in a fast crack speed region, and the increasing rate of fracture energy with $V$ decreases with increasing cross link density in the gels. In a slow crack speed region the fracture energy depends on crack speed more strongly than in the fast crack speed region. This indicates that a qualitative change exists in fracture process of the gels.Comment: 7 pages, 8 figures. Some errors in the first version have been correcte

Spectral Efficiency of Multi-User Adaptive Cognitive Radio Networks

In this correspondence, the comprehensive problem of joint power, rate, and subcarrier allocation have been investigated for enhancing the spectral efficiency of multi-user orthogonal frequency-division multiple access (OFDMA) cognitive radio (CR) networks subject to satisfying total average transmission power and aggregate interference constraints. We propose novel optimal radio resource allocation (RRA) algorithms under different scenarios with deterministic and probabilistic interference violation limits based on a perfect and imperfect availability of cross-link channel state information (CSI). In particular, we propose a probabilistic approach to mitigate the total imposed interference on the primary service under imperfect cross-link CSI. A closed-form mathematical formulation of the cumulative density function (cdf) for the received signal-to-interference-plus-noise ratio (SINR) is formulated to evaluate the resultant average spectral efficiency (ASE). Dual decomposition is utilized to obtain sub-optimal solutions for the non-convex optimization problems. Through simulation results, we investigate the achievable performance and the impact of parameters uncertainty on the overall system performance. Furthermore, we present that the developed RRA algorithms can considerably improve the cognitive performance whilst abide the imposed power constraints. In particular, the performance under imperfect cross-link CSI knowledge for the proposed `probabilistic case' is compared to the conventional scenarios to show the potential gain in employing this scheme

Orientational order and glassy states in networks of semiflexible polymers

Motivated by the structure of networks of cross-linked cytoskeletal biopolymers, we study the orientationally ordered phases in two-dimensional networks of randomly cross-linked semiflexible polymers. We consider permanent cross-links which prescribe a finite angle and treat them as quenched disorder in a semi-microscopic replica field theory. Starting from a fluid of un-cross-linked polymers and small polymer clusters (sol) and increasing the cross-link density, a continuous gelation transition occurs. In the resulting gel, the semiflexible chains either display long range orientational order or are frozen in random directions depending on the value of the crossing angle, the crosslink concentration and the stiffness of the polymers. A crossing angle $\theta\sim 2\pi/M$ leads to long range $M$-fold orientational order, e.g., "hexatic" or "tetratic" for $\theta=60^{\circ}$ or $90^{\circ}$, respectively. The transition is discontinuous and the critical cross-link density depends on the bending stiffness of the polymers and the cross-link geometry: the higher the stiffness and the lower $M$, the lower the critical number of cross-links. In between the sol and the long range ordered state, we always observe a gel which is a statistically isotropic amorphous solid (SIAS) with random positional and random orientational localization of the participating polymers.Comment: 20 pages, added references, minor changes, final version as published in PR