Tidal wind mapping from observations of a meteor radar chain in December 2011

This article proposes a technique to map the tidal winds in the mesosphere and lower thermosphere (MLT) region from the observations of a four-station meteor radar chain located at middle- and low-latitudes along the 120 degrees E meridian in the Northern Hemisphere. A 1month dataset of the horizontal winds in the altitude range of 80-100km is observed during December 2011. We first decompose the tidal winds into mean, diurnal, semidiurnal, and terdiurnal components for each station. It is found that the diurnal/semidiurnal components dominate at the low-latitude/midlatitude stations. Their amplitudes increase at lower altitudes and then decrease at higher altitudes after reaching a peak in the MLT region. Hough functions of the classical tidal theory are then used to fit the latitudinal distribution of each decomposed component. The diurnal component is found to be dominated by the first symmetric (1, 1) mode. Yet for the semidiurnal and terdiurnal components, the corresponding dominant modes are the second symmetric modes (2, 4) and (3, 5), and considerable contributions are also from the first antisymmetric modes (2, 3), (3, 4) and second antisymmetric modes (2, 5), (3, 6). Based on the decomposed results, we further map the horizontal winds in the domains of latitude, altitude and local time. The mapped horizontal winds successfully reproduce the local time versus altitudinal distributions of the original observations at the four stations. Thus, we conclude that the meteor radar chain is useful to monitor and study the regional characteristics of the tidal winds in the MLT region

A porous form Coomassie brilliant blue G250-isorhamnetin fluorescent composite coated with acrylic resin for tumor cell imaging

Four distinct fluorescence complexes, the fluorescent complex-1 (FC-1), fluorescent complex-2 (FC-2), fluorescent complex third (FC-3) and fluorescent complex fourth (FC-4), were created using isorhamnetin and Coomassie brilliant blue G250 as raw materials. The issue of isorhamnetin’s low solubility has been resolved, and isorhamnetin-coomassie brilliant blue G250 now has better biocompatibility. Four different forms of fluorescence compounds’ ultraviolet absorption spectra were identified. It was discovered that FC-2, FC-3, and FC-4, respectively, had double peaks at 483–620 nm. FC-4 had the highest ultraviolet absorption intensity, whereas FC-1 exhibited the most consistent and longest wavelength of ultraviolet absorption. Transmission electron microscopy revealed that the acrylic resin evenly disseminated the Coomassie brilliant blue G250-isorhamnetin complex in an amorphous flocculent form. Human prostate cancer cells (PC3) and human cervical cancer cells (HeLa) were investigated in the (Cell Counting Kit-8) CCK8 experiment under 10 different concentration circumstances, and the proliferation impact was 64.30% and 68.06%, respectively. Shown the complex’s strong anti-tumor properties and minimal cytotoxicity. Through in vitro imaging of tumor cells, it was found that FC-1’s fluorescent complex has high selectivity and can accurately infiltrate tumor cells, proving that it is biocompatible. The design not only addresses the issue of isorhamnein-Coomassie Bright Blue G250’s bioavailability, but it also has an effective visual fluorescence targeting effect

Design of the PMT underwater cascade implosion protection system for JUNO

Photomultiplier tubes (PMTs) are widely used underwater in large-scale neutrino experiments. As a hollow glass spherelike structure, implosion is unavoidable during long-term operation under large water pressure. There is a possibility of cascade implosion to neighbor PMTs due to shockwave. Jiangmen Underground Neutrino Observatory designed a protection structure for each 20-inch PMT, consisting of a top cover, a bottom cover, and their connection. This paper introduces the requirement and design of the PMT protection system, including the material selection, investigation of manufacture technology, and prototyping. Optimization and validation by simulation and underwater experiments are also presented.Comment: 10 pages, 15 figure

Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping

<p>Abstract</p> <p>Background</p> <p>Serotypes of the Foot-and-Mouth disease viruses (FMDVs) were generally determined by biological experiments. The computational genotyping is not well studied even with the availability of whole viral genomes, due to uneven evolution among genes as well as frequent genetic recombination. Naively using sequence comparison for genotyping is only able to achieve a limited extent of success.</p> <p>Results</p> <p>We used 129 FMDV strains with known serotype as training strains to select as many as 140 most serotype-specific nucleotide strings. We then constructed a linear-kernel Support Vector Machine classifier using these 140 strings. Under the leave-one-out cross validation scheme, this classifier was able to assign correct serotype to 127 of these 129 strains, achieving 98.45% accuracy. It also assigned serotype correctly to an independent test set of 83 other FMDV strains downloaded separately from NCBI GenBank.</p> <p>Conclusion</p> <p>Computational genotyping is much faster and much cheaper than the wet-lab based biological experiments, upon the availability of the detailed molecular sequences. The high accuracy of our proposed method suggests the potential of utilizing a few signature nucleotide strings instead of whole genomes to determine the serotypes of novel FMDV strains.</p

A Computational Framework for Influenza Antigenic Cartography

Influenza viruses have been responsible for large losses of lives around the world and continue to present a great public health challenge. Antigenic characterization based on hemagglutination inhibition (HI) assay is one of the routine procedures for influenza vaccine strain selection. However, HI assay is only a crude experiment reflecting the antigenic correlations among testing antigens (viruses) and reference antisera (antibodies). Moreover, antigenic characterization is usually based on more than one HI dataset. The combination of multiple datasets results in an incomplete HI matrix with many unobserved entries. This paper proposes a new computational framework for constructing an influenza antigenic cartography from this incomplete matrix, which we refer to as Matrix Completion-Multidimensional Scaling (MC-MDS). In this approach, we first reconstruct the HI matrices with viruses and antibodies using low-rank matrix completion, and then generate the two-dimensional antigenic cartography using multidimensional scaling. Moreover, for influenza HI tables with herd immunity effect (such as those from Human influenza viruses), we propose a temporal model to reduce the inherent temporal bias of HI tables caused by herd immunity. By applying our method in HI datasets containing H3N2 influenza A viruses isolated from 1968 to 2003, we identified eleven clusters of antigenic variants, representing all major antigenic drift events in these 36 years. Our results showed that both the completed HI matrix and the antigenic cartography obtained via MC-MDS are useful in identifying influenza antigenic variants and thus can be used to facilitate influenza vaccine strain selection. The webserver is available at http://sysbio.cvm.msstate.edu/AntigenMap

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals &lt;1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

Characteristics of the ionospheric total electron content of the equatorial ionization anomaly in the Asian-Australian region during 1996&ndash;2004

Ionospheric total electron content (TEC) of the equatorial ionization anomaly (EIA) is studied by analyzing dual-frequency signals of the Global Position System (GPS) acquired from a network of receivers around the Asian-Australian region during 1996–2004. The latitude, occurrence time, strength of the most developed EIA crest, and crest-to-trough ratio (CTR) for both the noon and post-sunset sector obtained from a daily TEC contour map have been used to study the solar cycle variations of EIA in the Asian-Australian region. The results reveal that semiannual and seasonal variations were the dominant factor that controls the morphology of the EIA structure which can be identified in the past studies (e.g. Wu et al., 2008). It is also found that the latitude and local time position of the anomaly crest show a hemispheric asymmetry because (a) The northern crest of EIA is expanded during the equinox indicating a weak semiannual variation while the southern crest is inhibited during June–August presenting a strong seasonal variation, and (b) The local time of the northern crest appears ~1.3 h earlier than that of the southern crest in June while showing no difference at December. Solar activity dependence is more evident in the EIA crest region than in the EIA trough region and least in the post-sunset sector at equinox. A seasonal linear relationship is derived between the post-sunset CTR and solar flux, which should be caused by the solar-dependant equatorial E&times;B vertical drift