HCV genotype 6 prevalence, spontaneous clearance and diversity amongst elderly members of the Li ethnic minority in Baisha County, China

The epidemiology of hepatitis C virus varies widely across geographical regions and ethnic groups. Our previous study showed that 6 strains isolated from Baisha County, Hainan Island, China, were all new genotype 6 (gt6) subtypes which differed significantly from subtypes of other regions. In the current study, we conducted a comprehensive epidemiological survey of HCV in the Li ethnic group, native to Baisha County. Anti‐HCV antibodies were detected by 2 independent ELISAs in all participants, and positive results confirmed by the recombinant immunoblot assay (RIBA) and HCV RNA viral loads were measured. Univariate chi‐square test and multivariable logistic regression analyses were used to determine the risk factors for HCV infection and spontaneous clearance rates. Indeterminate RIBA results were excluded or included in analyses; consequently, findings were expressed as a range. Direct sequencing of partial regions within NS5B and E1 was employed for genotyping. Among 1682 participants, 117 to 153 were anti‐HCV positive (7.0%‐9.1%), with 42.7%‐52.6% confirmed to have cleared infection. Anti‐HCV positivity was associated with older age (≥60 years) (OR = 0.02, 95% CI 0.01‐0.05, P < 0.01) and surgery (OR = 2.75, 95% CI 1.36‐5.57, P < 0.01), with no significant difference found between the HCV infection group and the HCV spontaneous clearance group. The gt6 subtype distribution characteristics of Baisha County were unique, complex and diverse. The sequences did not cluster with known gt6 subtypes but formed 4 Baisha community‐specific groups. HCV infection in members of the Li minority ethnic group is characterized by high prevalence rates in the elderly, high spontaneous clearance rates and broad gt6 diversity

Comparison of A and B Starch Granules from Three Wheat Varieties

Three starches from the wheat varieties AK58, ZM18 and YZ4110 were separated into large (A) and small (B) granules, which were characterized structurally and evaluated for their functional properties. SEM results showed that the size of A-granules from ZM18 and YZ4110 were about the same, but the sizes of A-granules and B-granules from AK58 were larger than those of ZM18 and YZ4110. FTIR spectra showed that all the samples exhibited a similar pattern, with seven main modes with maximum absorbance peaks near 3,500, 3,000, 1,600, 1,400, 1,000, 800, 500 cm−1. The B-granules of ZM18 and YZ4110 had less amylose content, although the difference among the total amylose contents of the three unfractionated starches was not significant. X-ray diffraction (XRD) patterns showed predominantly A-type crystallinity for all the starches. The A-granules showed sharper XRD patterns than the other starches. DSC analysis showed that the A-granules had broader ranges of gelatinization temperatures than the B-granules from the same wheat variety. The gelatinization enthalpy (ΔH) of A-granules was higher than that of B-granules. AK58 exhibited the smallest enthalpy, while ZM18 showed the largest enthalpy. In pasting tests, the A-granule starch of AK58 had higher peak, final and setback viscosity, lower breakdown and pasting temperature, and the B-granule starch and unfractionated starch of AK58 had lower peak, breakdown, final and setback viscosity and higher pasting temperature than ZM18 and YZ4110

Quantitative trait loci controlling amino acid contents in wheat (Triticum aestivum L.)

Abstract Quantitative trait locus/loci (QTL) for amino acid content (AAC), 17 individual amino acid and total amino acid (TAA) contents of wheat were studied using a doubled haploid (DH) population containing 168 progeny lines derived from a cross between 'Huapei 3' and 'Yumai 57', Chinese bread wheat cultivars. The inclusive composite interval mapping (ICIM) was applied on wheat meals from 2008 and 2009 in Shandong province, China using QTL IciMapping 2.2. The results indicated that total 32 QTL were detected in wheat meals from 2008, contributing to 4.86-30.95% of total phenotypic variation. Total 53 QTL, accounting for 4.39-23.87% of total phenotypic variance, were detected in wheat meals from 2009. Most QTL were co-localized, forming 13 QTL clusters in two cropping seasons, whereas 4 QTL clusters were coincident in two years. Especially, the loci near marker Xbarc86 on chromosome 3A detected in both years influenced 13 amino acids, and also controlled protein and wet gluten contents, which could be used for marker for protein and amino acids contents

De novo assembly and characterization of the complete chloroplast genome of Elymus magellanicus (É.Desv.) Á.Löve, 1984 (Poaceae, Pooideae)

Elymus magellanicus (É.Desv.) Á.Löve is a foliage accent plant that originated in South America. In this study, the complete chloroplast genome of E. magellanicus is reported. It was found to have a total size of 133,249 bp. The chloroplast genome was found to consist of two inverted repeats (IRA and IRB) of 21,421 bp each, a small single-copy region of 12,709 bp, and a large single-copy region (77,698 bp). The annotation results show the GC content of the chloroplast genome to be 38.47%, including 40 tRNA genes, 82 protein-coding genes, and 8 rRNA genes. Phylogenetic analysis of 29 species revealed that E. magellanicus is closely related to E. arenarius

Characterization of the complete mitochondrial genome of Elymus magellanicus (É.Desv.) Á.Löve (Poaceae, Pooideae)

Elymus magellanicus (É.Desv.) Á.Löve is a foliage accent plant that found in South America. In this study, the mitochondrial genome of E. magellanicus was sequenced, assembled, and annotated. The complete circular mitogenome of E. magellanicus is 583,450 bp in length and the overall G + C content of mitogenome is 42.27%. It harbors 39 protein-coding genes, 64 transfer RNA genes, eight ribosomal RNA genes, and 20 simple sequence repeats. Phylogenetic analysis indicates a relatively close relationship of E. magellanicus to Hordeum vulgare subsp. Spontaneum, Aegilops speltoides, Triticum aestivum, and T. aestivum cv. Chinese Yumai

Improving Stem Lodging Resistance, Yield, and Water Efficiency of Wheat by Adjusting Supplemental Irrigation Frequency

Optimizing supplemental irrigation (SI) measures and enhancing stem lodging resistance can be the keys to achieving a high and stable yield and high efficiency in wheat. The experiment was established as a two-factor field trial in 2018–2020. We used four SI combinations at different stages: rain-fed (T0), SI at jointing (T1), SI at jointing + anthesis (T2), and SI at regreening + jointing + anthesis (T3) with ‘Bainong4199’ (BN4199) and ‘Zhoumai18’ (ZM18) as experimental materials. We researched the effects of different SI combinations on the stem characteristics, stem vigor, grain filling, and yield of winter wheat. The results suggest that the basal internode at the anthesis stage grew with the increase in SI amount, but the stem fracture resistance of T1 and T2 was higher than that of T0 and T3. As grain filling continued, the lodging index increased and stem vigor decreased. In comparison with T3, the average stem lodging index of T2 decreased by 21.92% for ‘BN4199’ and 36.63% for ‘ZM18’, but the WUE increased by 29.76% and 14.92%, respectively. The grain yield increased with the increase in irrigation times during the growth period; there was no significant difference between T2 and T3 in 2018–2019. In a biennial comparison, the grain yield of all treatments in 2019–2020 was significantly lower than those in 2018–2019, and the grain yield of ‘ZM 18’ was lower than that of ‘BN 4199’. Correlation analysis displayed that there were significant positive correlations between post-anthesis stem vigor and the dry matter contribution rate of post-anthesis to grains and between the grain filling rate at 21–28 days after anthesis (DAA) and stem strength at 30 DAA. In summary, selecting a high-yield lodging-resistant wheat variety with SI at jointing and anthesis was beneficial for forming strong stems and maintaining higher stem vigor at the later growth stage for grain filling, which reduced lodging risk and ensured high yield and high WUE

A novel wheat lodging resistance evaluation method and device based on the thrust force of the stalks.

Wind speed is the most essential factor causing wheat lodging. Accurate understanding of the wind speed characteristics at near-surface layer of wheat fields and its effect on lodging is the basis of objective evaluation of wheat lodging resistance. In this paper, the characteristics of wind speed at the near-surface layer of wheat fields and their impact on lodging were studied. A new device was proposed for directly measuring the critical thrust force of wheat population lodging resistance in the field based on the black box method. A novel wheat stem lodging resistance evaluation method/model was established based on the critical thrust force of wheat population stem lodging and the wind speed characteristics of field near-surface layer. The method used the lodging critical wind speed as the index of wheat lodging resistance, which was verified by wind tunnel and field experiment. The results showed that there was a significant positive correlation between the critical wind speed of wheat lodging resistance and its critical thrust force. The values of wheat canopy apparent roughness length, wind attack angle, ventilation coefficient and other wind field characteristics had important effects on the calculation of wheat lodging resistance critical wind speed. The method can eliminate bias when calculating wheat lodging resistance by considering only one or a few indicators and the results of field lodging evaluation were consistent with those of field lodging survey. The method is simple and can be used to assess the lodging resistance of wheat, select extension regions for wheat varieties, and evaluate lodging factors in the field

Cleaved amplified polymorphic sequence (CAP) marker development and haplotype geographic distribution of TaBOR1.2 associated with grain number in common wheat in China

Boron is an essential micronutrient for plant growth. The BOR gene encodes an efflux-type B transporter, and the grain number of BOR1 mutants decreased. To determine the relationship between TaBOR1 and grain number in common wheat, polymorphic sites within genomic and promoter sequences and haplotypes of TaBOR1.2 were identified. Association analysis was carried out between haplotypes and grain number in a natural population. The results indicated that the exon–intron structures of TaBOR1.1, TaBOR1.2 and TaBOR1.3 were conserved, with sequence homologies ranging from 96 to 97%. Two polymorphic sites were identified, one at − 1085 bp upstream from the start codon of TaBOR1.2 and another at 1102 bp downstream, in ten modern varieties and ten landraces. Two cleaved amplified polymorphic sequence markers were developed, and four haplotypes in 348 modern varieties were detected. Hap-G-A was the favored haplotype and increased grain numbers by 5.22, 3.47, and 4.91 in 2002, 2005, and 2010, respectively. This haplotype has been selected during Chinese wheat improvement; its frequency has increased from 16.21% in the 1960s to 26% in the 2020s. Overall, cleaved amplified polymorphic sequence markers of TaBOR1.2 could be used for marker-assisted selection for increasing the grain number of common wheat

Transcriptome analysis reveals important candidate genes involved in grain-size formation at the stage of grain enlargement in common wheat cultivar "Bainong 4199".

Grain-size is one of the yield components, and the first 14 days after pollination (DAP) is a crucial stage for wheat grain-size formation. To understand the mechanism of grain-size formation at the whole gene expression level and to identify the candidate genes related to grain pattern formation, cDNA libraries from immature grains of 5 DAP and 14 DAP were constructed. According to transcriptome analysis, a total of 12,555 new genes and 9,358 differentially expressed genes (DEGs) were obtained. In DEGs, 2,876, 3,357 and 3,125 genes were located on A, B and D subgenome respectively. 9,937 (79.15%) new genes and 9,059 (96.80%) DEGs were successfully annotated. For DEGs, 4,453 were up-regulated and 4,905 were down-regulated at 14 DAP. The Gene Ontology (GO) database indicated that most of the grain-size-related genes were in the same cluster. The Kyoto Encyclopedia of Genes and Genomes (KEGG) database analysis showed that 130, 129 and 20 DEGs were respectively involved in starch and sucrose metabolism, plant hormone signal transduction and ubiquitin-mediated proteolysis. Expression levels of 8 randomly selected genes were confirmed by qRT-PCR, which was consistent with the transcriptome data. The present database will help us understand the molecular mechanisms underlying early grain development and provide the foundation for increasing grain-size and yield in wheat breeding programs