Determination of Noncovalent Intermolecular Interaction Energy from Electron Densities

Noncovalent intermolecular interactions, widely found in molecular clusters and bio-molecules, play a key role in many important processes, such as phase changes, folding of proteins and molecular recognition. However, accurate calculation of interaction energies is a very difficult task because the interactions are normally very weak. Rigorous expressions for the electrostatic and polarization interaction energies between two molecules A and B, in term of the electronic densities, have been programmed: (see formula in document). Z is atomic charge, ρ0 is the electron density of the isolated molecule and Δρind is the electron density change of the molecule caused by polarization. With some approximations, procedures for electrostatic and polarization energy calculations were developed that involve numerical integration. Electrostatic and polarization energies for several bimolecular systems, some of which are hydrogen bonded, were calculated and the results were compared to other theoretical and experimental data. A second method for the computing of intermolecular interaction energies has also been developed. It involves a “supermolecule” calculation for the entire system, followed by a partitioning of the overall electric density into the two interacting components and then application of eq. (1) to find the interaction energy. In this approach, according to Feynman’s explanation to intermolecular interactions, all contributions are treated in a unified manner. The advantages of this method are that it avoids treating the supersystem and subsystems separately and no basis set superposition error (BSSE) correction is needed. Interaction energies for several hydrogen-bonded systems are calculated by this method. Compared with the result from experiment and high level ab initio calculation, the results are quite reliable

Suppression of MyD88-dependent signaling alleviates neuropathic pain induced by peripheral nerve injury in the rat

Abstract Background MyD88 is the adaptor protein of MyD88-dependent signaling pathway of TLRs and IL-1 receptor and regulates innate immune response. However, it was not clear whether and how MyD88 and related signaling pathways in the dorsal root ganglion (DRG) and spinal dorsal horn (SDH) are involved in neuropathic pain. Methods Chronic constriction injury (CCI) was used to induce neuropathic pain in the rat. The expression of MyD88, TRIF, IBA1, and GFAP was detected with immunofluorescent staining and Western blot. The expression of interleukin-1 beta (IL-1β), high mobility group box 1 (HMGB1), NF-κB-p65, phosphorylated NF-κB-p65, ERK, phosphorylated ERK, and tumor necrosis factor-alpha (TNF-α) was detected with Western blot. Pain-related behavioral effects of MyD88 homodimerization inhibitory peptide (MIP) were accessed up to 3 weeks after intrathecal administration. Results Peripheral nerve injury significantly increased the protein level of MyD88 in the DRG and SDH, but had no effect on TRIF. MyD88 was found partly distributed in the nociceptive neurons in the DRGs and the astrocytes and microglia in the SDH. HMGB1 and IL-1β were also found upregulated in nociceptive pathways of CCI rats. Intrathecal application of MIP significantly alleviated mechanical and thermal hyperalgesia in the CCI rats and also reversed CCI-induced upregulation of MyD88 in both DRG and SDH. Further investigation revealed that suppression of MyD88 protein reduced the release of TNF-α and glial activation in the SDH in the CCI rats. Conclusions MyD88-dependent TIR pathway in the DRG and SDH may play a role in CCI-induced neuropathic pain. MyD88 might serve as a potential therapeutic target for neuropathic pain

World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide

The World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and microbiologists all over the world. Here, we provide an overview of WDCM including all of its integrated services. Culture Collections Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72 countries and regions. Global Catalogue of Microorganism (GCM) gathers strain catalogue information and provides a data retrieval, analysis, and visualization system of microbial resources. Currently, GCM includes more than 368,000 strains from 103 culture collections in 43 countries and regions. Analyzer of Bioresource Citation (ABC) is a data mining tool extracting strain related publications, patents, nucleotide sequences and genome information from public data sources to form a knowledge base. Reference Strain Catalogue (RSC) maintains a database of strains listed in International Standards Organization (ISO) and other international or regional standards. RSC allocates a unique identifier to strains recommended for use in diagnosis and quality control, and hence serves as a valuable cross-platform reference. WDCM provides free access to all these services at www.wdcm.org.National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550]; Bureau of Science & Technology for Development of Chinese Academy of Sciences (Strategic bio-resources information center) and Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]. Funding for open access charge: National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550] ; Bureau of Science & Technology for Development of Chinese Academy of Sciences [Strategic bio-resources information center]; Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]

Integrated Optimisation Model of Daily Freight Train Scheduling and Dynamic Railcar Routing Based on a Two-Layer Space-Time Network

This paper focuses on daily freight train scheduling and dynamic railcar routing problems for rail freight transportation at the operational level. Two mixed integer linear programming models that adopted different strategies were formulated based on a continuous two-layer time-space network. We simultaneously considered the benefits of railroad company and service quality when setting the objective function. By solving the models, we can distribute the dynamic railcar flows to the train paths in the basic train timetable to obtain the daily train operation plan over a short time horizon (e.g. a day), which will be helpful for dispatchers to make decisions such as the empty railcar distribution and car routing (trip planning). Finally, we compared two models on a part of the Chinese railroad network. The results show that the second model can effectively improve the efficiency of railroad freight transportation

Static flow on complete noncompact manifolds I: short-time existence and asymptotic expansions at conformal infinity

In this paper, we study short-time existence of static flow on complete noncompact asymptotically static manifolds from the point of view that the stationary points of the evolution equations can be interpreted as static solutions of the Einstein vacuum equations with negative cosmological constant. For a static vacuum $(M^n,g,V),$ we also compute the asymptotic expansions of $g$ and $V$ at conformal infinity.Comment: 25 page

Multi-hop Multi-RIS Wireless Communication Systems: Multi-reflection Path Scheduling and Beamforming

Reconfigurable intelligent surface (RIS) provides a promising way to proactively augment propagation environments for better transmission performance in wireless communications. Existing multi-RIS works mainly focus on link-level optimization with predetermined transmission paths, which cannot be directly extended to system-level management, since they neither consider the interference caused by undesired scattering of RISs, nor the performance balancing between different transmission paths. To address this, we study an innovative multi-hop multi-RIS communication system, where a base station (BS) transmits information to a set of distributed users over multi-RIS configuration space in a multi-hop manner. The signals for each user are subsequently reflected by the selected RISs via multi-reflection line-of-sight (LoS) links. To ensure that all users have fair access to the system to avoid excessive number of RISs serving one user, we aim to find the optimal beam reflecting path for each user, while judiciously determining the path scheduling strategies with the corresponding beamforming design to ensure the fairness. Due to the presence of interference caused by undesired scattering of RISs, it is highly challenging to solve the formulated multi-RIS multi-path beamforming optimization problem. To solve it, we first derive the optimal RISs' phase shifts and the corresponding reflecting path selection for each user based on its practical deployment location. With the optimized multi-reflection paths, we obtain a feasible user grouping pattern for effective interference mitigation by constructing the maximum independent sets (MISs). Finally, we propose a joint heuristic algorithm to iteratively update the beamforming vectors and the group scheduling policies to maximize the minimum equivalent data rate of all users.Comment: Accepted by IEEE Transactions on Wireless Communicatio

Cooperative Beamforming Design for Multiple RIS-Assisted Communication Systems

Reconfigurable intelligent surface (RIS) provides a promising way to build programmable wireless transmission environments. Owing to the massive number of controllable reflecting elements on the surface, RIS is capable of providing considerable passive beamforming gains. At present, most related works mainly consider the modeling, design, performance analysis and optimization of single-RIS-assisted systems. Although there are a few of works that investigate multiple RISs individually serving their associated users, the cooperation among multiple RISs is not well considered as yet. To fill the gap, this paper studies a cooperative beamforming design for multi-RIS-assisted communication systems, where multiple RISs are deployed to assist the downlink communications from a base station to its users. To do so, we first model the general channel from the base station to the users for arbitrary number of reflection links. Then, we formulate an optimization problem to maximize the sum rate of all users. Analysis shows that the formulated problem is difficult to solve due to its non-convexity and the interactions among the decision variables. To solve it effectively, we first decouple the problem into three disjoint subproblems. Then, by introducing appropriate auxiliary variables, we derive the closed-form expressions for the decision variables and propose a low-complexity cooperative beamforming algorithm. Simulation results have verified the effectiveness of the proposed algorithm through comparison with various baseline methods. Furthermore, these results also unveil that, for the sum rate maximization, distributing the reflecting elements among multiple RISs is superior to deploying them at one single RIS

GEmo-CLAP: Gender-Attribute-Enhanced Contrastive Language-Audio Pretraining for Speech Emotion Recognition

Contrastive learning based pretraining methods have recently exhibited impressive success in diverse fields. In this paper, we propose GEmo-CLAP, a kind of efficient gender-attribute-enhanced contrastive language-audio pretraining (CLAP) model for speech emotion recognition. To be specific, we first build an effective emotion CLAP model Emo-CLAP for emotion recognition, utilizing various self-supervised learning based pre-trained models. Then, considering the importance of the gender attribute in speech emotion modeling, two GEmo-CLAP approaches are further proposed to integrate the emotion and gender information of speech signals, forming more reasonable objectives. Extensive experiments on the IEMOCAP corpus demonstrate that our proposed two GEmo-CLAP approaches consistently outperform the baseline Emo-CLAP with different pre-trained models, while also achieving superior recognition performance compared with other state-of-the-art methods.Comment: 5 page

Molecular anchors in the solid state: Restriction of intramolecular rotation boosts emission efficiency of luminogen aggregates to unity

Introduction of freely rotatable tetraphenylethene (TPE) to conventional luminophors quenches their light emissions in the solutions but endows the resultant molecules (TPEArs) with aggregation-induced emission characteristics in the condensed phase due to the restriction of intramolecular rotation. High fluorescence quantum yields up to 100% have been achieved in the films of TPEArs