Additional file 1: of Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

Figure S1. Box plot for dPTA distribution of the 2 feed intake-related phenotypes of RFI and DMI. (PDF 90 kb

Additional file 2: of Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle

Table S1. Primer information for CNV validation. Table S2. Characteristics of CNV and their overlapped genes. Table S3. Gene ontology (GO) of genes that overlap with CNV. Table S4. CNV-based GWAS results for the 10 phenotypes of interest among Holstein cattle. Table S5. qPCR validation of the significant CNV. (XLSX 96 kb

Data files used in the paper

A zip file including data sets and input files for various analysis methods

mtDNA Haplotype Sequence Alignment

Swamp type and river type haplotype alignments. These data were used to generate Fig.S1

input file for skyline plot anlaysis

This is an example input file for skyline plot ananlysi