45 research outputs found
肥満糖尿病ラットにおける胃バイパス後の選択的腸管刺激による糖代謝への影響
研究科: 医学薬学府学位:千大院医薬博甲第医1000号要約博士(医学)千葉大
Mesocosm_SH.scaffold.fa.blast.filter.summary.scaf
List subset of scaffolds by species that were used to map to references
mitogenomes_all_corrected_reading_frame.v0301
File contains the reference sequences used for mapping the .sam files to and is needed for importing .sam files into Geneious for SNP analysi
Mesocosm_SH.aligning.unique.sorted.MarkedDuplicates
File contains all reads mapped to references considered in study. The file in conjunction with mitogenomes_all_corrected_reading_frame.v0301.txt allows the SNPs to be called in using Geneious
JudayCreek.scaffold.fa.blast.filter.summary.scaf
List subset of scaffolds by species that were used to map to references in Geneious and is illustrated in Figure 2 of manuscript
commands_used_for_analysis
All commands used to execute bioinformatic pipeline
norm_50x
Command used to down sample reads for de novo assembly
Mock.50x.scaffold
Contains all scaffolds that were assembled from the mock community sample
Mesocosm_EH.aligning.unique.sorted.MarkedDuplicates
File contains all reads mapped to references considered in study. The file in conjunction with mitogenomes_all_corrected_reading_frame.v0301.txt allows the SNPs to be called in using Geneious
JudayCreek.scaffold
Contains all scaffolds that were assembled from the Juday Creek water samples