Path sampling for lifetimes of metastable magnetic skyrmions and direct comparison with Kramers' method

We perform a direct comparison between Kramers' method in many dimensions -- i.e., Langer's theory -- adapted to magnetic spin systems, and a path sampling method in the form of forward flux sampling, as a means to compute collapse rates of metastable magnetic skyrmions. We show that a good agreement is obtained between the two methods. We report variations of the attempt frequency associated with skyrmion collapse by three to four orders of magnitude when varying the applied magnetic field by 5$\%$ of the exchange strength, which confirms the existence of a strong entropic contribution to the lifetime of skyrmions. This demonstrates that in complex systems, the knowledge of the rate prefactor, in addition to the internal energy barrier, is essential in order to properly estimate a lifetime.Comment: 5 pages, 5 figures (main text), 8 pages including supplemental materia

Molecular phylogeny of brachiopods and phoronids based on nuclear-encoded small subunit ribosomal RNA gene sequences

Brachiopod and phoronid phylogeny is inferred from SSU rDNA sequences of 28 articulate and nine inarticulate brachiopods, three phoronids, two ectoprocts and various outgroups, using gene trees reconstructed by weighted parsimony, distance and maximum likelihood methods. Of these sequences, 33 from brachiopods, two from phoronids and one each from an ectoproct and a priapulan are newly determined. The brachiopod sequences belong to 31 different genera and thus survey about 10% of extant genus-level diversity. Sequences determined in different laboratories and those from closely related taxa agree well, but evidence is presented suggesting that one published phoronid sequence (GenBank accession UO12648) is a brachiopod-phoronid chimaera, and this sequence is excluded from the analyses. The chiton, Acanthopleura, is identified as the phenetically proximal outgroup; other selected outgroups were chosen to allow comparison with recent, non-molecular analyses of brachiopod phylogeny. The different outgroups and methods of phylogenetic reconstruction lead to similar results, with differences mainly in the resolution of weakly supported ancient and recent nodes, including the divergence of inarticulate brachiopod sub-phyla, the position of the rhynchonellids in relation to long- and short-looped articulate brachiopod clades and the relationships of some articulate brachiopod genera and species. Attention is drawn to the problem presented by nodes that are strongly supported by non-molecular evidence but receive only low bootstrap resampling support. Overall, the gene trees agree with morphology-based brachiopod taxonomy, but novel relationships are tentatively suggested for thecideidine and megathyrid brachiopods. Articulate brachiopods are found to be monophyletic in all reconstructions, but monophyly of inarticulate brachiopods and the possible inclusion of phoronids in the inarticulate brachiopod clade are less strongly established. Phoronids are clearly excluded from a sister-group relationship with articulate brachiopods, this proposed relationship being due to the rejected, chimaeric sequence (GenBank UO12648). Lineage relative rate tests show no heterogeneity of evolutionary rate among articulate brachiopod sequences, but indicate that inarticulate brachiopod plus phoronid sequences evolve somewhat more slowly. Both brachiopods and phoronids evolve slowly by comparison with other invertebrates. A number of palaeontologically dated times of earliest appearance are used to make upper and lower estimates of the global rate of brachiopod SSU rDNA evolution, and these estimates are used to infer the likely divergence times of other nodes in the gene tree. There is reasonable agreement between most inferred molecular and palaeontological ages. The estimated rates of SSU rDNA sequence evolution suggest that the last common ancestor of brachiopods, chitons and other protostome invertebrates (Lophotrochozoa and Ecdysozoa) lived deep in Precambrian time. Results of this first DNA-based, taxonomically representative analysis of brachiopod phylogeny are in broad agreement with current morphology-based classification and systematics and are largely consistent with the hypothesis that brachiopod shell ontogeny and morphology are a good guide to phylogeny

Re-evaluation of the 1950?1962 total ozone record from Longyearbyen, Svalbard

International audienceThe historical total ozone measurements taken with Dobson Spectrophotometer #8 at Longyearbyen (78.2° N, 15.6° E), Svalbard, Norway, in the period 1950?1962 have been re-analyzed and homogenized based on the original measurement logs, using present-day procedures. In lack of sufficient calibration information, an empirical quality assessment was performed, based on a climatological comparison with ozone measurements in Tromsø, using TOMS data at both sites in the period 1979?2001, and ground-based Dobson data in the period 1950?1962. The assessment revealed that the C wavelength pair direct-sun (DS) measurements are most trustworthy (and most frequent), while the WMO standard reference mode AD direct-sun has a systematic bias. Zenith-blue (ZB) measurements at solar zenith angles (SZA) <78° were adjusted to DS data using different empirical functions before and after 1957 (the start of the International Geophysical Year). ZB measurements at larger SZAs were homogenized by means of a normalization function derived from days with measurements over a wide range of SZAs. Zenith-cloudy measurements, which are particularly frequent during the summer months, were homogenized by applying correction factors depending on the cloud type (high thin clouds and medium to low thick clouds). The combination of all measurements yields a total of 4685 single values, covering 1637 days from September 1950 to September 1962; moon measurements during the polar night add another 137 daily means. The re-evaluated data show a convincing consistence with measurements since 1979 (TOMS, SAOZ, Dobson) as well as with the 1957?1962 data stored at the World Ozone and UV Data Centre (WOUDC)

The evolutionary genetics of highly divergent alleles of the mimicry locus in Papilio dardanus

Background: The phylogenetic history of genes underlying phenotypic diversity can offer insight into the evolutionary origin of adaptive traits. This is especially true where single genes have large phenotypic effects, for example in determining polymorphic mimicry in butterflies. Here, we characterise the evolutionary history of two candidate genes for the mimicry switch in the polymorphic Batesian mimic Papilio dardanus coding for the transcription factors engrailed and invected. Results: We show that phased haplotypes associated with the dominant morphs f. poultoni and f. planemoides are phylogenetically highly divergent, in particular at non-synonymous sites. Some non-synonymous changes are shared between the divergent alleles suggesting either convergence or a shared ancestry. Gene trees for invected do not show this pattern. Despite their great divergence, all engrailed alleles of P. dardanus were monophyletic with respect to alleles of closely related species. Phylogenetic analyses therefore reveal no evidence for introgression from other species. A McDonald-Kreitman test conducted on a population sample from South Africa confirms a significant excess of intraspecific non-synonymous diversity in P. dardanus engrailed, suggesting long-term balanced polymorphism at this locus. Conclusions: The divergence between engrailed haplotypes suggests an evolutionary history distorted by selection with multiple changes reflecting recurrent selective sweeps. The high level of intraspecific polymorphism observed is characteristic of balancing selection on this locus, as expected if the gene engrailed is under phenotypic selection for the maintenance of multiple mimetic morphs. Non-synonymous changes in key functional portions of a major transcription factor are likely to be deleterious but if maintained in a dominant allele at low frequency, heterozygosity would reduce the associated genetic load

Design of a five-axis ultra-precision micro-milling machine—UltraMill. Part 2: Integrated dynamic modelling, design optimisation and analysis

Using computer models to predict the dynamic performance of ultra-precision machine tools can help manufacturers to substantially reduce the lead time and cost of developing new machines. However, the use of electronic drives on such machines is becoming widespread, the machine dynamic performance depending not only on the mechanical structure and components but also on the control system and electronic drives. Bench-top ultra-precision machine tools are highly desirable for the micro-manufacturing of high-accuracy micro-mechanical components. However, the development is still at the nascent stage and hence lacks standardised guidelines. Part 2 of this two-part paper proposes an integrated approach, which permits analysis and optimisation of the entire machine dynamic performance at the early design stage. Based on the proposed approach, the modelling and simulation process of a novel five-axis bench-top ultra-precision micro-milling machine tool—UltraMill—is presented. The modelling and simulation cover the dynamics of the machine structure, the moving components, the control system and the machining process and are used to predict the entire machine performance of two typical configurations

Undecidability of accordance for open systems with unbounded message queues

We study asynchronously communicating open systems modeled as Petri nets with an interface. An accordance preorder describes when one open system can be safely replaced by another open system without aecting some behavioral property of the overall system. Although accordance is decidable for several behavioral properties if we assume a previously known bound on the maximal number of pending messages, we show that it is not decidable without this assumption. Keywords: Petri nets, open nets, accordance preorder, theory of computatio

Dissecting the spiral galaxy M83: mid-infrared emission and comparison with other tracers of star formation

We present a detailed mid-infrared study of the nearby, face-on spiral galaxy M83 based on ISOCAM data. M83 is a unique case study, since a wide variety of MIR broad-band filters as well as spectra, covering the wavelength range of 4 to 18\mu m, were observed and are presented here. Emission maxima trace the nuclear and bulge area, star-formation regions at the end of the bar, as well as the inner spiral arms. The fainter outer spiral arms and interarm regions are also evident in the MIR map. Spectral imaging of the central 3'x3' (4 kpc x 4 kpc) field allows us to investigate five regions of different environments. The various MIR components (very small grains, polycyclic aromatic hydrocarbon (PAH) molecules, ionic lines) are analyzed for different regions throughout the galaxy. In the total 4\mu m to 18\mu m wavelength range, the PAHs dominate the luminosity, contributing between 60% in the nuclear and bulge regions and 90% in the less active, interarm regions. Throughout the galaxy, the underlying continuum emission from the small grains is always a smaller contribution in the total MIR wavelength regime, peaking in the nuclear and bulge components. The implications of using broad-band filters only to characterize the mid-infrared emission of galaxies, a commonly used ISOCAM observation mode, are discussed. We present the first quantitative analysis of new H-alpha and 6cm VLA+Effelsberg radio continuum maps of M83. The distribution of the MIR emission is compared with that of the CO, HI, R band, H-alpha and 6cm radio. A striking correlation is found between the intensities in the two mid-infrared filter bands and the 6cm radio continuum. To explain the tight mid-infrared-radio correlation we propose the anchoring of magnetic field lines in the photoionized shells of gas clouds.Comment: 22 pages, 15 figures. Accepted for publication in A&

Undecidability of accordance for open systems with unbounded message queues

We study asynchronously communicating open systems modeled as Petri nets with an interface. An accordance preorder describes when one open system can be safely replaced by another open system without aecting some behavioral property of the overall system. Although accordance is decidable for several behavioral properties if we assume a previously known bound on the maximal number of pending messages, we show that it is not decidable without this assumption. Keywords: Petri nets, open nets, accordance preorder, theory of computatio

Cicrumnuclear Supernova Remnants and HII Regions in NGC 253

Archival VLA data has been used to produce arcsecond-resolution 6- and 20-cm images of the region surrounding the nuclear 200-pc (~15") starburst in NGC 253. Twenty-two discrete sources stronger than 0.4 mJy have been detected within ~2 kpc (~3') of the galaxy nucleus; almost all these sources must be associated with the galaxy. None of the radio sources coincides with a detected X-ray binary, so they appear to be due to supernova remnants and H II regions. The region outside the central starburst has a derived radio supernova rate of <~0.1/yr, and may account for at least 20% of the recent star formation in NGC 253. Most of the newly identified sources have steep, nonthermal radio spectra, but several relatively strong thermal sources also exist, containing the equivalent of tens of O5 stars. These stars are spread over tens of parsecs, and are embedded in regions having average ionized gas densities of 20-200/cm^3, much lower than in the most active nuclear star-forming regions in NGC 253 or in the super star clusters seen in other galaxies. The strongest region of thermal emission coincides with a highly reddened area seen at near-infrared wavelengths, possibly containing optically obscured H II regions.Comment: 17 pages, 3 postscript figures, AASTeX format, in press for Astronomical Journal, July 200