15 research outputs found
Infile for SGoF+ analysis
Input file for sequential goodness-of-fit test to correct for multiple comparisons implemented in SGoF+. The file consists of an integer indicating the total number of tests (102) and after it two columns with pairs of identifiers and p-values
All SDM points
This file contains latitude and longitude coordinates for the 91 unique localities used to construct species distribution models
Structure infile
This is the input file for Structure analyses. The second column contains sample group information used as a prior. Missing data are represented by -9
Alignment phylip format
MtDNA alignment in phylip format for PartitionFinder analysis
Geneland individual labels
This is the file of individual labels for Geneland analyses in the same order as the genotypes and coordinates files
MrBayesDir infile
Nexus file for modified version of MrBayes 3.1.2 with Dirichlet priors on branch lengths. Partitioning scheme and substitution models determined using PartitionFinder
Geneland coordinates
This is the spatial coordinate file (in UTM format) for Geneland analyses. There is one line per individual and two columns representing the x-axis and y-axis coordinate. Original latitude/longitude coordinates were collected in the field using a hand-held GPS (WGS84 datum) and subsequently converted to UTM format in ArcView
IBDWS infile for IBR regression
Matrixes of resistance distance (above diagonal) and genetic distance (below diagonal) for Isolation by Distance Web Service analysis. Genetic distances calculated as Fst/(1-Fst) in Genepop v4.2
Genepop infile
This is the input file for Genepop v4 analyses. Individual sample names have been replaced by x and y coordinates in meters. Microsatellite and mitochondrial data are included. Missing data are represented by 000
IBDWS infile for IBD regression
Matrixes of geographic distance (in meters; above diagonal) and genetic distance (below diagonal) for Isolation by Distance Web Service analysis. Genetic distances calculated as Fst/(1-Fst) in Genepop v4.2