15 research outputs found

    Infile for SGoF+ analysis

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    Input file for sequential goodness-of-fit test to correct for multiple comparisons implemented in SGoF+. The file consists of an integer indicating the total number of tests (102) and after it two columns with pairs of identifiers and p-values

    All SDM points

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    This file contains latitude and longitude coordinates for the 91 unique localities used to construct species distribution models

    Structure infile

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    This is the input file for Structure analyses. The second column contains sample group information used as a prior. Missing data are represented by -9

    Geneland individual labels

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    This is the file of individual labels for Geneland analyses in the same order as the genotypes and coordinates files

    MrBayesDir infile

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    Nexus file for modified version of MrBayes 3.1.2 with Dirichlet priors on branch lengths. Partitioning scheme and substitution models determined using PartitionFinder

    Geneland coordinates

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    This is the spatial coordinate file (in UTM format) for Geneland analyses. There is one line per individual and two columns representing the x-axis and y-axis coordinate. Original latitude/longitude coordinates were collected in the field using a hand-held GPS (WGS84 datum) and subsequently converted to UTM format in ArcView

    IBDWS infile for IBR regression

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    Matrixes of resistance distance (above diagonal) and genetic distance (below diagonal) for Isolation by Distance Web Service analysis. Genetic distances calculated as Fst/(1-Fst) in Genepop v4.2

    Genepop infile

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    This is the input file for Genepop v4 analyses. Individual sample names have been replaced by x and y coordinates in meters. Microsatellite and mitochondrial data are included. Missing data are represented by 000

    IBDWS infile for IBD regression

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    Matrixes of geographic distance (in meters; above diagonal) and genetic distance (below diagonal) for Isolation by Distance Web Service analysis. Genetic distances calculated as Fst/(1-Fst) in Genepop v4.2
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