Observations of cold extragalactic gas clouds at z=0.45z = 0.45 towards PKS 1610-771

We present results from MUSE observations of a 21-cm HI absorption system detected with the Australian Square Kilometre Array Pathfinder radio telescope at redshift $z = 0.4503$ towards the $z = 1.71$ quasar PKS 1610-771. We identify four galaxies (A, B, X and Y) at the same redshift as the 21-cm H I Damped Lyman-{\alpha} (DLA) absorption system, with impact parameters ranging from less than 10 kpc to almost 200 kpc from the quasar sightline. Ca II and Na I absorption is seen in the MUSE spectrum of the background QSO, with velocities coinciding with the initial HI 21-cm detection, but tracing less dense and warmer gas. This metal-line component aligns with the rotating ionised disc of galaxy B (impact parameter 18 kpc from the QSO) and appears to be co-rotating with the galaxy disc. In contrast, the 21-cm HI absorber is blueshifted relative to the galaxies nearest the absorber and has the opposite sign to the velocity field of galaxy B. Since galaxies A and B are separated by only 17 kpc on the sky and $70$ km s$^{-1}$ in velocity, it appears likely that the 21-cm detection traces extragalactic clouds of gas formed from their interaction. This system reveals that the cold 100 K neutral gas critical for star formation can be associated with complex structures beyond the galaxy disc, and is a first case study made in preparation for future large 21-cm absorption surveys like the ASKAP First Large Absorption Survey in HI.Comment: Accepted. 13 pages, 7 figure

FAST discovery of a fast neutral hydrogen outflow

In this letter, we report the discovery of a fast neutral hydrogen outflow in SDSS J145239.38+062738.0, a merging radio galaxy containing an optical type I active galactic nuclei (AGN). This discovery was made through observations conducted by the Five-hundred-meter Aperture Spherical radio Telescope (FAST) using redshifted 21-cm absorption. The outflow exhibits a blueshifted velocity likely up to $\sim-1000\,\rm km\,s^{-1}$ with respect to the systemic velocity of the host galaxy with an absorption strength of $\sim -0.6\,\rm mJy\,beam^{-1}$ corresponding to an optical depth of 0.002 at $v=-500\,\rm km\,s^{-1}$. The mass outflow rate ranges between $2.8\times10^{-2}$ and $3.6\, \rm M_\odot \, yr^{-1}$, implying an energy outflow rate ranging between $4.2\times10^{39}$ and $9.7\times10^{40}\rm\,erg\,s^{-1}$, assuming 100 K $<T_{\rm s}<$ 1000 K. Plausible drivers of the outflow include the star bursts, the AGN radiation, and the radio jet, the last of which is considered the most likely culprit according to the kinematics. By analysing the properties of the outflow, the AGN, and the jet, we find that if the HI outflow is driven by the AGN radiation, the AGN radiation seems not powerful enough to provide negative feedback whereas the radio jet shows the potential to provide negative feedback. Our observations contribute another example of a fast outflow detected in neutral hydrogen, as well as demonstrate the capability of FAST in detecting such outflows.Comment: Accepted by ApJ

Does a radio jet drive the massive multi-phase outflow in the ultra-luminous infrared galaxy IRAS 10565+2448?

We present new upgraded Giant Metrewave Radio Telescope (uGMRT) HI 21-cm observations of the ultra-luminous infrared galaxy IRAS 10565+2448, previously reported to show blueshifted, broad, and shallow HI absorption indicating an outflow. Our higher spatial resolution observations have localised this blueshifted outflow, which is $\sim$ 1.36 kpc southwest of the radio centre and has a blueshifted velocity of $\sim 148\,\rm km\,s^{-1}$ and a full width at half maximum (FWHM) of $\sim 581\,\rm km\,s^{-1}$. The spatial extent and kinematic properties of the HI outflow are consistent with the previously detected cold molecular outflows in IRAS 10565+2448, suggesting that they likely have the same driving mechanism and are tracing the same outflow. By combining the multi-phase gas observations, we estimate a total outflowing mass rate of at least $140\, \rm M_\odot \,yr^{-1}$ and a total energy loss rate of at least $8.9\times10^{42}\,\rm erg\,s^{-1}$, where the contribution from the ionised outflow is negligible, emphasising the importance of including both cold neutral and molecular gas when quantifying the impact of outflows. We present evidence of the presence of a radio jet and argue that this may play a role in driving the observed outflows. The modest radio luminosity $L_{\rm1.4GHz}$ $\sim1.3\times10^{23}\,{\rm W\,Hz^{-1}}$ of the jet in IRAS 10565+2448 implies that the jet contribution to driving outflows should not be ignored in low radio luminosity AGN.Comment: 12 pages, 9 figures, accepted for publication in MNRA

The FLASH pilot survey: an HI absorption search against MRC 1-Jy radio sources

We report an ASKAP search for associated HI 21-cm absorption against bright radio sources from the Molonglo Reference Catalogue (MRC) 1-Jy sample. The search uses pilot survey data from the ASKAP First Large Absorption Survey in \hi (FLASH) covering the redshift range $0.42 < z < 1.00$. From a sample of 62 MRC 1-Jy radio galaxies and quasars in this redshift range we report three new detections of associated HI 21-cm absorption, yielding an overall detection fraction of $1.8\%^{+4.0\%}_{-1.5\%}$. The detected systems comprise two radio galaxies (MRC 2216$-$281 at $z=0.657$ and MRC 0531$-$237 at $z=0.851$) and one quasar (MRC 2156$-$245 at $z=0.862$). The MRC 0531$-$237 absorption system is the strongest found to date, with a velocity integrated optical depth of $\rm 143.8 \pm 0.4 \ km \ s^{-1}$. All three objects with detected HI 21-cm absorption are peaked-spectrum or compact steep-spectrum (CSS) radio sources, classified based on our SED fits to the spectra. Two of them show strong interplanetary scintillation at 162 MHz, implying that the radio continuum source is smaller than 1 arcsec in size even at low frequencies. Among the class of peaked-spectrum and compact steep-spectrum radio sources, the HI detection fraction is $23\%^{+22\%}_{-13\%}$. This is consistent within $1\sigma$ with a detection fraction of $\approx 42\%^{+21\%}_{-15\%}$ in earlier reported GPS and CSS samples at intermediate redshifts ($0.4 < z < 1.0$). All three detections have a high 1.4 GHz radio luminosity, with MRC 0531$-$237 and MRC 2216$-$281 having the highest values in the sample, $\rm > 27.5 \ W \ Hz^{-1}$. The preponderance of extended radio sources in our sample could partially explain the overall low detection fraction, while the effects of a redshift evolution in gas properties and AGN UV luminosity on the neutral gas absorption still need to be investigated.Comment: 28 pages, 9 figures and 7 Tables. Submitted to MNRA

The Gene Ontology knowledgebase in 2023

The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs). GO annotations cover genes from organisms across the tree of life as well as viruses, though most gene function knowledge currently derives from experiments carried out in a relatively small number of model organisms. Here, we provide an updated overview of the GO knowledgebase, as well as the efforts of the broad, international consortium of scientists that develops, maintains, and updates the GO knowledgebase. The GO knowledgebase consists of three components: (1) the GO-a computational knowledge structure describing the functional characteristics of genes; (2) GO annotations-evidence-supported statements asserting that a specific gene product has a particular functional characteristic; and (3) GO Causal Activity Models (GO-CAMs)-mechanistic models of molecular "pathways" (GO biological processes) created by linking multiple GO annotations using defined relations. Each of these components is continually expanded, revised, and updated in response to newly published discoveries and receives extensive QA checks, reviews, and user feedback. For each of these components, we provide a description of the current contents, recent developments to keep the knowledgebase up to date with new discoveries, and guidance on how users can best make use of the data that we provide. We conclude with future directions for the project

Trends of Runoff Variation and Effects of Main Causal Factors in Mun River, Thailand During 1980–2018

Mun River is the largest tributary of the Mekong River in Thailand and provides abundant water resources not only for an important agricultural area in Thailand but also for the lower Mekong River. To understand how the runoff of Mun River responds to climate change and human activities in recent decades, this study performed a detailed examination of the characteristics of runoff variation based on measurements at two hydrological gauging stations on the main stem of Mun River during 1980&ndash;2018. Using the Mann-Kendall test, Morlet wavelet transform and Double Cumulative Curve methods, this study identifies that the variation of annual runoff of Mun River encountered an abruption in 1999/2000, with an increased trend taking place since then. Furthermore, a detailed assessment of the effects of the variations in rainfall, temperature, evaporation, and land use types extracted from remote sensing images at the basin scale reveals that a significant reduction in forest area and slight reductions in evaporation and farmland area taking place since 1999 can lead to an increase in the runoff of Mun River, while the dramatic increase in garden area since 1999 tends to make the runoff decrease