Volcano plots displaying differential gene expression between healthy and disease <i>A. cervicornis</i>.

<p>Figure a. plots gene expression values of the putative coral transcripts, figure b. plots putative non coral transcripts. Each point represents an individual gene transcript. Red points represent significantly differentially expressed transcripts (adj p-value < 0.05). </p

Heatmap of immune-related differentially expressed coral transcripts.

<p>Heatmap showing expression profiles of healthy (H) and WBD infected (D) <i>A.cervicornis</i>. Transcripts annotations are based on GO terms and manually curated categories. Relative expression levels are shown in red (up) and blue (down).</p

White Band Disease on <i>Acropora cervicornis</i>.

<p>A colony of the Staghorn coral <i>A. cervicornis</i> infected with White Band Disease showing the characteristic white band of dying and necrotic coral tissue.</p

Annotations for Homarus americanus transcriptome

Protein annotations from tBlast of de novo assembled Homarus americanus transcriptome against NCBI, and UniprotKB Swiss-Prot and TrEMBL databases. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.co

Count Tables in R

R script for counting differentially expressed and up- or down-regulated contigs for a given category. Useful for interpreting expression changes for multiple unique contigs within a category (i.e. multiple proteins of an ion channel). Written by Lara McGrath. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.co

Read Counts for Homarus americanus transcriptome samples

Read counts from read mapping conducted in Bowtie (version 0.12.7) against de novo assembled Homarus americanus transcriptome. For identification of samples: U= untreated, P=proctolin-treated, M=muscle, B= brain, H= heart, A= abdominal ganglia, and number indicates individual lobster. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.co

Transcriptome assembly for American lobster Homarus americanus

Transcriptome assembly for the American lobster, Homarus americanus. Assembly conducted in Trinity (version 8-14-2013) from 145 million single-end reads (Illumina HiSeq 2000) from mRNA extracted from nervous system, heart, and muscle tissues of Homarus americanus (2012). For additional information, please email Lara McGrath at lara.l.mcgrath [at] gmail.co

Express Results File ANC_003

Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample ANC_003, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA

Raw Read Count Expression Data for ND Chu et al 2014

Total raw read count expression data from Nucella lapillus from the accompanying publication. This file was created by eXpress (http://bio.math.berkeley.edu/eXpress/) for analysis in DEseq2. The sample names are as in the publication. Each row represents a transcript, as assembled in Trinity (see publication for transcriptome assembly accession; http://trinityrnaseq.sourceforge.net/). Experimental snails were collected from near Nahant, Massachusetts, USA

Express Parameters File HNC_37

Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample HNC_37, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA