The Genetic Signatures of Noncoding RNAs

The majority of the genome in animals and plants is transcribed in a developmentally regulated manner to produce large numbers of non–protein-coding RNAs (ncRNAs), whose incidence increases with developmental complexity. There is growing evidence that these transcripts are functional, particularly in the regulation of epigenetic processes, leading to the suggestion that they compose a hitherto hidden layer of genomic programming in humans and other complex organisms. However, to date, very few have been identified in genetic screens. Here I show that this is explicable by an historic emphasis, both phenotypically and technically, on mutations in protein-coding sequences, and by presumptions about the nature of regulatory mutations. Most variations in regulatory sequences produce relatively subtle phenotypic changes, in contrast to mutations in protein-coding sequences that frequently cause catastrophic component failure. Until recently, most mapping projects have focused on protein-coding sequences, and the limited number of identified regulatory mutations have been interpreted as affecting conventional cis-acting promoter and enhancer elements, although these regions are often themselves transcribed. Moreover, ncRNA-directed regulatory circuits underpin most, if not all, complex genetic phenomena in eukaryotes, including RNA interference-related processes such as transcriptional and post-transcriptional gene silencing, position effect variegation, hybrid dysgenesis, chromosome dosage compensation, parental imprinting and allelic exclusion, paramutation, and possibly transvection and transinduction. The next frontier is the identification and functional characterization of the myriad sequence variations that influence quantitative traits, disease susceptibility, and other complex characteristics, which are being shown by genome-wide association studies to lie mostly in noncoding, presumably regulatory, regions. There is every possibility that many of these variations will alter the interactions between regulatory RNAs and their targets, a prospect that should be borne in mind in future functional analyses

Characterization of TiO2-coated carbon nanotube photocatalysts.

C

Fe-amino acid complexes immobilized on silica gel as active and highly selective catalysts in cyclohexene epoxidation

In this work, the syntheses, structure, superoxide dismutase (SOD) activity, and the catalytic use in the oxidative transformations of cyclohexene of covalently grafted Fe(III)-complexes formed with various or various combinations of C-protected amino acid (l-histidine, l-tyrosine, l-cysteine and l-cystine) ligands are presented. The structural features of the surface complexes were studied by XANES/EXAFS and mid/far-IR spectroscopies. The compositions of the complexes were determined by ICP-MS and the Kjeldahl method. The SOD activities of the materials were evaluated in a biochemical test reaction. The obtained materials were used as catalysts for the oxidation of cyclohexene with peracetic acid in acetone. Both covalent grafting and building the complex onto the surface of the chloropropylated silica gel were successful in most cases. In many instances, the obtained structures and the coordinating groups were found to substantially vary upon changing the conditions of the syntheses. All the covalently immobilized Fe(III)-complexes displayed SOD activities, and most of them were found to be capable of catalyzing the oxidation of cyclohexene with appreciably high activities and outstanding epoxide selectivities

The structure of Fe(III) ions in strongly alkaline aqueous solutions from EXAFS and Mossbauer spectroscopy

To establish the structure of ferric ions in strongly alkaline (pH > 13) environments, aqueous NaOH solutions supersaturated with respect to Fe(III) and the solid ferric-hydroxo complex salts precipitating from them have been characterized with a variety of experimental techniques. From UV measurements, in solutions of pH > 13, only one kind of Fe(III)-hydroxo complex species was found to be present. The micro crystals obtained from such solutions were proven to be a new, so far unidentified solid phase. Mossbauer spectra of the quick-frozen solution and that of the complex salt indicated a highly symmetrical ferric environment in both systems From the EXAFS and XANES spectra, the environment of the ferric ion in these solutions (both native and quick-frozen) and in the complex salt was found to be different. In the complex salt, the bond lengths are consistent with an octahedral coordination around the ferric centres. In solution, the coordination geometry of Fe(III) is most probably tetrahedral. Our results demonstrate that in strongly alkaline aqueous solutions, ferric ions behave very similarly to other structurally related tervalent ions, like Al(III) or Ga(III)

Bioinspired covalently grafted Cu(II)-C protected amino acid complexes: selective catalysts in the epoxidation of cyclohexene

In this work, the syntheses of covalently grafted C-protected Cu(II)-amino acid (methylesters of l-histidine and l-cystine) uniform and mixed ligand complexes with two different amino acid esters are described using chloropropylated silica gel as the support. The conditions of the syntheses were systematically altered. The structural features of the substances obtained were studied by the Kjeldahl method, ICP-MS, X-ray absorption and mid/far infrared spectroscopies. The superoxide dismutase-like activities of the materials were determined in a biochemical test reaction and these substances were also tested as catalysts in the oxidation of cyclohexene. It was possible to prepare metal ion-amino acid complexes grafted with covalent bonds onto the supports. All the covalently anchored materials displayed superoxide dismutase-like activity and most of them were active in the oxidation of cyclohexene, providing the epoxide with high selectivity

Multinuclear Complex Formation between Ca(II) and Gluconate Ions in Hyperalkaline Solutions

Alkaline solutions containing polyhydroxy carboxylates and Ca(II) are typical in cementitious radioactive waste repositories. Gluconate (Gluc(-)) is a structural and functional representative of these sugar carboxylates. In the current study, the structure and equilibria of complexes forming in such strongly alkaline solutions containing Ca2+ and gluconate have been studied. It was found that Gluc(-) significantly increases the solubility of portlandite (Ca(OH)(2)(s)) under these conditions and Ca2+ complexes of unexpectedly high stability are formed. The mononuclear (CaGluc(+) and [CaGlucOH](0)) complexes were found to be minor species, and predominant multinuclear complexes were identified. The formation of the neutral [Ca(2)Gluc(OH)(3)](0) (log beta(213) = 8.03) and [Ca(3)Gluc(2)(OH)(4)](0) (log beta(324) = 12.39) has been proven via H-2/Pt-electrode potentiometric measurements and was confirmed via XAS, H-1 NMR, ESI-MS, conductometry, and freezing-point depression experiments. The binding sites of Gluc- were identified from multinuclear NMR measurements. Besides the carboxylate group, the O atoms on the second and third carbon atoms were proved to be the most probable sites for Ca2+ binding. The suggested structure of the trinuclear complex was deduced from ab initio calculations. These observations are of relevance in the thermodynamic modeling of radioactive waste repositories, where the predominance of the binuclear Ca2+ complex, which is a precursor of various high-stability ternary complexes with actinides, is demonstrated