Where are the tropical plants? A call for better inclusion of tropical plants in studies investigating and predicting the effects of climate change

Tropical plant species are systematically underrepresented in large-scale analyses or synthesis looking at the potential effects of global climate change.  The reason being that we simply don’t know enough about the distributions and ecologies of most tropical plant species to predict their fate under climate change. This gaping hole in our knowledge is extremely worrisome given the high diversity of tropical plants, the crucial roles that they play in supporting global diversity and ecosystem function, and the elevated threats that climate change may pose to tropical species in general.  </p

Four Decades of Andean Timberline Migration and Implications for Biodiversity Loss with Climate Change

Rapid 21st-century climate change may lead to large population decreases and extinction in tropical montane cloud forest species in the Andes. While prior research has focused on species migrations per se, ecotones may respond to different environmental factors than species. Even if species can migrate in response to climate change, if ecotones do not they can function as hard barriers to species migrations, making ecotone migrations central to understanding species persistence under scenarios of climate change. We examined a 42-year span of aerial photographs and high resolution satellite imagery to calculate migration rates of timberline–the grassland-forest ecotone–inside and outside of protected areas in the high Peruvian Andes. We found that timberline in protected areas was more likely to migrate upward in elevation than in areas with frequent cattle grazing and fire. However, rates in both protected (0.24 m yr-1) and unprotected (0.05 m yr-1) areas are only 0.5–2.3% of the rates needed to stay in equilibrium with projected climate by 2100. These ecotone migration rates are 12.5 to 110 times slower than the observed species migration rates within the same forest, suggesting a barrier to migration for mid- and high-elevation species. We anticipate that the ecotone will be a hard barrier to migration under future climate change, leading to drastic population and biodiversity losses in the region unless intensive management steps are taken

Centuries-old logging legacy on spatial and temporal patterns in understory herb communities

a b s t r a c t Understory herb communities in the Southern Appalachians are among the highest biodiversity plant communities in North America. In the mid-1990s, a debate began over whether understory herb communities recover to their pre-disturbance states following logging. Studies showing reduced herb-layer diversity in previously logged forests were criticized for not accounting for intersite environmental heterogeneity. More recent studies have addressed environmental heterogeneity, but have neglected long-term recovery by using &quot;mature forests&quot; as young as 80 years old as the benchmark for diversity comparison, even though old growth stands have disturbance return intervals exceeding 500 years. Here we address concerns clouding previous studies of high-diversity Appalachian herb communities and investigate their long-term recovery by comparing paired sites of old growth forest and forest logged 100-150 years ago. We found that species richness and individual abundance is greater in old growth forests than mature forests and that species composition differed significantly between the two. Turnover in species among old growth and mature forests accounted for 11% of the total species richness and was significantly greater than expected. Species turnover at intermediate (5-50 m) and landscape-scales (&gt;10 km) contributed the most towards total species richness. Herb communities in rich cove forests have successional trajectories that exceed 150 years, with important community changes still occurring long after the forest returns to what has been previously termed a &quot;mature&quot; state. To conserve the diverse herb layer, we conclude that mature forest stands are too young to serve as baselines for recovery, landscapescale preservation of multiple forest stands is needed to maximize species richness, and maintaining 100-150-year logging rotations will likely lead to loss of biodiversity

An annotated checklist of trees and relatives in tropical montane forests from southeast Peru: the importance of continue collecting

Los Andes están considerados como los puntos calientes más diversos de los trópicos, dentro de estos se encuentra el Parque Nacional del Manu, cuyas complejas condiciones climáticas y fisiográficas albergan una mega-diversidad y endemismo. En el presente trabajo se presenta una lista anotada de especies arbóreas y afines a lo largo de un gradiente de elevación desde los bosques submontanos a 800 m hasta la línea de bosque a 3625 m en la Reserva de Biosfera del Manu. En base a una red de 21 parcelas permanentes de una hectárea y exploraciones botánicas se sistematiza la información florística por rangos de elevación, distribución geográfica y endemismo. Estos resultados preliminares se traducen en 1108 especies de las cuales el 39.7% son morfoespecies, el 43% de las especies determinadas son registros nuevos para la región del Cusco, 15 especies son nuevos registros para la flora peruana, 40 especies son endémicas para Perú y 30 son potenciales especies nuevas para la ciencia. Adicionalmente, se resalta la expansión del rango altitudinal para el 45.2% de las especies determinadas (302 especies). Estos resultados son una muestra de la alta diversidad arbórea y afines en estos ecosistemas montañosos registrados en tan solo ~20 km de distancia geográfica, además muestra lo escasamente colectados y poco estudiados que se encuentran. Mas colecciones botánicas son necesarias - estos estudios básicos de florística son imperativos para un mejor entendimiento de la distribución de especies y la función del ecosistemas, además ayudará a responder una de las grandes preguntas en la ecología global moderna, ¿Cómo responderán los bosques tropicales al cambio climático global?The tropical Andes and adjacent Amazon are Earth’s highest biodiversity hotspot. Manu National Park in southeastern Peru encompasses an entire watershed, ranging from Andean highlands to Amazonian lowlands, and is a megadiverse landscape on the Andes to Amazon transition. Here we present an annotated checklist of trees and related species is along an elevation gradient in the Manu Biosphere Reserve that runs from sub-montane forests at 800 m elevation up to the tree line at 3625 m. Based on a network of 21 1-hectare permanent tree plots and botanical explorations, the floristic information is systematized by elevation ranges, geographical distribution and endemism. These preliminary results show 1108 species. Of these, 43% are new records for the region of Cusco, 15 species are new records for the Peruvian flora, 40 species are endemics for Peru, and 30 are potential new species for science. Another 39.7% are identified to genus or family level and remain morphospecies. Additionally, we show altitudinal range expansion for 45.2% of identified species (302 species). These results were found in a transect of plots spanning only 20 km of geographic distance, and are a sample of the high tree diversity in these mountainous ecosystems. The data show how poorly collected and understudied these ecosystems are. Basic floristic studies and collections are imperative for a better understanding of species distribution and function of ecosystems, and the basic biodiversity of the tropical Andes. They will also help to answer a major, unresolved question in modern global ecology of how tropical forests will respond to global climate change

Microbes do not follow the elevational diversity patterns of plants and animals

The elevational gradient in plant and animal diversity is one of the most widely documented patterns in ecology and, although no consensus explanation exists, many hypotheses have been proposed over the past century to explain these patterns. Historically, research on elevational diversity gradients has focused almost exclusively on plant and animal taxa. As a result, we do not know whether microbes exhibit elevational gradients in diversity that parallel those observed for macroscopic taxa. This represents a key knowledge gap in ecology, especially given the ubiquity, abundance, and functional importance of microbes. Here we show that, across a montane elevational gradient in eastern Peru, bacteria living in three distinct habitats (organic soil, mineral soil, and leaf surfaces) exhibit no significant elevational gradient in diversity (r2 0.1 in all cases), in direct contrast to the significant diversity changes observed for plant and animal taxa across the same montane gradient (r2 > 0.75, P < 0.001 in all cases). This finding suggests that the biogeographical patterns exhibited by bacteria are fundamentally different from those of plants and animals, highlighting the need for the development of more inclusive concepts and theories in biogeography to explain these disparities

Flight speed and time of day heavily influence rainforest canopy wildlife counts from drone-mounted thermal camera surveys

The payload size and commercial availability of thermal infrared cameras mounted on drones has initiated a new wave in the potential for conservationists and researchers to survey, count and detect wildlife, even the most complex of habitats such as forest canopies. However, several fundamental design and methodological questions remain to be tested before standardized monitoring approaches can be broadly adopted. We test the impact of both the speed of drone flights and diel flight period on tropical rainforest canopy wildlife detections. Detection and identification rates differ between both flight speeds and diel time. Overall ~ 36% more detections were made during slower flight speeds, along with a greater ability to categorize taxonomic groups. Flights conducted at 3am resulted in ~ 67% more detections compared to flights conducted at 7am (the diel period with the lowest detection rate). However, 112% more detections could be identified to taxonomic group in 7am flights compared with 3am flights – due to the types of wildlife being identified and the assistance of the RGB camera. Although, this technology holds great promise for carrying out surveys in structurally complex and poorly known ecosystems like forest canopies, there is more to do in further methodological testing, and building automated post-processing systems. Our results suggest that drone studies in the same habitat types, with the same animal densities, could be off by multiples if flown during different times and/or at different speeds. The difference could be an alarming 5-6x variation in animal detections or identification depending on changes in these two factors alone

Evolutionary heritage shapes tree distributions along an Amazon-to-Andes elevation gradient

Understanding how evolutionary constraints shape the elevational distributions of tree lineages provides valuable insight into the future of tropical montane forests under global change. With narrow elevational ranges, high taxonomic turnover, frequent habitat specialization, and exceptional levels of endemism, tropical montane forests and trees are predicted to be highly sensitive to environmental change. Using plot census data from a gradient traversing > 3,000 m in elevation on the Amazonian flank of the Peruvian Andes, we employ phylogenetic approaches to assess the influence of evolutionary heritage on distribution trends of trees at the genus‐level. We find that closely related lineages tend to occur at similar mean elevations, with sister genera pairs occurring a mean 254 m in elevation closer to each other than the mean elevational difference between non‐sister genera pairs. We also demonstrate phylogenetic clustering both above and below 1,750 m a.s.l, corresponding roughly to the cloud‐base ecotone. Belying these general trends, some lineages occur across many different elevations. However, these highly plastic lineages are not phylogenetically clustered. Overall, our findings suggest that tropical montane forests are home to unique tree lineage diversity, constrained by their evolutionary heritage and vulnerable to substantial losses under environmental changes, such as rising temperatures or an upward shift of the cloud‐base.National Science Foundation, Grant/Award Number: NSF DEB LTREB 1754647 and NSF DEB LTREB 1754664; Natural Environment Research Council, Grant/Award Number: NE/G018278/1 and NE/L002558/1; Australian Research Council, Grant/Award Number: DP17010409

Assessing the carbon capture potential of reforestation project

Acknowledgements We acknowledge funding through the UP-Green-LCA (NE/P019668/1) and Soils-R-GGREAT (NE/P019498/1) projects of the greenhouse gas removal (GGR) programme. The GGR programme is financed by the UK Natural Environment Research Council (NERC), Engineering and Physical Science Research Council (EPSRC), Economic and Social Science Research Council (ESRC) and the UK department for Business, Energy and Industrial Strategy (BEIS). We thank CINCIA and its funders (USAID and WWF) for their help and support during this projectPeer reviewedPublisher PD

Low dose influenza virus challenge in the ferret leads to increased virus shedding and greater sensitivity to oseltamivir

Ferrets are widely used to study human influenza virus infection. Their airway physiology and cell receptor distribution makes them ideal for the analysis of pathogenesis and virus transmission, and for testing the efficacy of anti-influenza interventions and vaccines. The 2009 pandemic influenza virus (H1N1pdm09) induces mild to moderate respiratory disease in infected ferrets, following inoculation with 106 plaque-forming units (pfu) of virus. We have demonstrated that reducing the challenge dose to 102 pfu delays the onset of clinical signs by 1 day, and results in a modest reduction in clinical signs, and a less rapid nasal cavity innate immune response. There was also a delay in virus production in the upper respiratory tract, this was up to 9-fold greater and virus shedding was prolonged. Progression of infection to the lower respiratory tract was not noticeably delayed by the reduction in virus challenge. A dose of 104 pfu gave an infection that was intermediate between those of the 106 pfu and 102 pfu doses. To address the hypothesis that using a more authentic low challenge dose would facilitate a more sensitive model for antiviral efficacy, we used the well-known neuraminidase inhibitor, oseltamivir. Oseltamivir-treated and untreated ferrets were challenged with high (106 pfu) and low (102 pfu) doses of influenza H1N1pdm09 virus. The low dose treated ferrets showed significant delays in innate immune response and virus shedding, delayed onset of pathological changes in the nasal cavity, and reduced pathological changes and viral RNA load in the lung, relative to untreated ferrets. Importantly, these observations were not seen in treated animals when the high dose challenge was used. In summary, low dose challenge gives a disease that more closely parallels the disease parameters of human influenza infection, and provides an improved pre-clinical model for the assessment of influenza therapeutics, and potentially, influenza vaccines