1,154 research outputs found

    Regional muscle activity and length dynamics of the avian pectoralis during flight

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    Suppression of nonsense-mediated mRNA decay permits unbiased gene trapping in mouse embryonic stem cells

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    An international collaborative project has been proposed to inactivate all mouse genes in embryonic stem (ES) cells using a combination of random and targeted insertional mutagenesis techniques. Random gene trapping will be the first choice in the initial phase, and gene-targeting experiments will then be carried out to individually knockout the remaining ‘difficult-to-trap’ genes. One of the most favored techniques of random insertional mutagenesis is promoter trapping, which only disrupts actively transcribed genes. Polyadenylation (poly-A) trapping, on the other hand, can capture a broader spectrum of genes including those not expressed in the target cells, but we noticed that it inevitably selects for the vector integration into the last introns of the trapped genes. Here, we present evidence that this remarkable skewing is caused by the degradation of a selectable-marker mRNA used for poly-A trapping via an mRNA-surveillance mechanism, nonsense-mediated mRNA decay (NMD). We also report the development of a novel poly-A-trap strategy, UPATrap, which suppresses NMD of the selectable-marker mRNA and permits the trapping of transcriptionally silent genes without a bias in the vector-integration site. We believe the UPATrap technology enables a simple and straightforward approach to the unbiased inactivation of all mouse genes in ES cells

    Ferromagnetic feature from Mn near room temperature in the fine particles of GdMn2Ge2 and TbMn2Ge2

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    The magnetization behaviors of GdMn2Ge2 and TbMn2Ge2 in the bulk and in the fine particles obtained by high-energy ball-milling are compared. Pronounced modificayions in the spontaneous, remnent and high-field magnetization in the fine particle form, attributable to Mn are observed. The results indicate that the antiferromagnetism of Mn sub-lattice known for the bulk form in the range 100-300 K gets weakened in favor of ferromagnetism in the fine particles. On the basis of this observation, we infer that there are other factors like size (and possibly defects) also play a role to decide the exact nature of magnetic ordering of Mn in this ternary family of compounds, contrasting the traditionally held view that the basal plane Mn-Mn distance is the crucial controlling parameter.Comment: Communicated for publication on 2nd January 201

    Regeneration in Cirrhosis of the Liver Following Partial Hepatectomy

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    Distribution of regenerative hepatocytes was observed by autoradiographic study in at liver after partial hepatectomy in order to investigate the relationship between hepatic blood flow around the pseudolobule and regeneration in cirrhosis of the liver. In cirrhotic liver, pseudolobules were mostly supplied by hepatic arterial flow as most of portal blood flow were bypassed around the pseudolobule resulting in marked decrease of sinusoidal blood flow. Regenerative rate of liver remnant was not increased in cirrhotic hepatectomized group during the experimental period, while it was increased to 105.0±21.2% at 48 hours in normal hepatectomized group after operation (P<0. 01). Unelevated regenerative rate in cirrhotic liver may have been induced by marked decrease of sinusoidal portal blood flow caused by intrahepatic portavenous shunt. As judged by H3-thymidine incorporation, DNA synthesis was increased to a maximum of 8335.1±1668.8 dpm/mg/min. at 36 hours in normal liver, and of 6538.9±2898.5 dpm/mg/min. at 48 hours in cirrhotic liver after partial hepatectomy (P<0.01). Average labeled hepatocyte number was also significantly increased to a peak of 48.0±9.1 at 36 hours in lobules of normal liver (P<0.001) and of 12.9±4.8 at 48 hours in pseudolobules of cirrhotic liver after partial hepatectomy (P< 0.01). Dissociation of unelevated regenerative rate of liver remnant from increase of DNA synthesis in cirrhotic hepatectomized group may indicate that cell volume stimulating factor is entirely different from cell number stimulating factor, and each factor plays a role individually. Direction of spreading of regeneration in normal liver was from peripheral zone to central zone, while spreading of regeneration in cirrhotic liver did not have specific direction in the pseudolobule. Direction of spreading of regeneration in normal hepatectomized group may substantiate the relation between direction of intralobular blood flow and liver regeneration. Nonspecific distribution in cirrhotic liver which has no direction of regeneration, indicates that regeneration does not always need the portal blood flow and can be supported by hepatic arterial flow which is expected to contain the portal blood factor after systemic circulation

    Occurrence of thiamin pyrophosphate-dependent 2-oxoglutarate decarboxylase in mitochondria of Euglena gracilis

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    Abstract2-Oxoglutarate decarboxylase which catalyzes the conversion of 2-oxoglutarate into succinate semialdehyde occurs in mitochondria of Euglena gracilis which lacks a 2-oxoglutarate dehydrogenase complex. The enzyme reaction required thiamin pyrophosphate, MgCl2, 2-mercaptoethanol and NADP+ for the maximum activity, and was not affected by pyruvate and oxalacetate. In the reaction, the enzyme consumed 2-oxoglutarate, evolved CO2 and formed succinate semialdehyde in stoichiometric relationship. The maximum enzyme activity was found at pH 7.0 and 40° C, and Km values for 2-oxoglutarate and thiamin pyrophosphate were 0.33 and 0.056 mM, respectively. These results indicate that the thiamin pyrophosphate-dependent Euglena decarboxylase belongs to a new type of decarboxylase to be designated as 2-oxoglutarate decarboxylase. The probable role of the new decarboxylase in Euglena mitochondria is discussed with regard to the tricarboxylic acid cycle

    Direct evidence for the magnetic ordering of Nd ions in NdMn2_2Si2_2 and NdMn2_2Ge2_2 by high resolution inelastic neutron scattering

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    We have investigated the low energy nuclear spin excitations in NdMn2_2Si2_2 and NdMn2_2Ge2_2 by high resolution inelastic neutron scattering. Previous neutron diffraction investigations gave ambiguous results about Nd magnetic ordering at low temperatures. The present element-specific technique gave direct evidence for the magnetic ordering of Nd ions. We found considerable difference in the process of the Nd magnetic ordering at low temperature in NdMn2_2Si2_2 and NdMn2_2Ge2_2. Our results are consistent with those of magnetization and recent neutron diffraction measurements

    Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome.

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    Axonal protein synthesis and degradation are rapidly regulated by extrinsic signals during neural wiring, but the full landscape of proteomic changes remains unknown due to limitations in axon sampling and sensitivity. By combining pulsed stable isotope labeling of amino acids in cell culture with single-pot solid-phase-enhanced sample preparation, we characterized the nascent proteome of isolated retinal axons on an unparalleled rapid timescale (5 min). Our analysis detects 350 basally translated axonal proteins on average, including several linked to neurological disease. Axons stimulated by different cues (Netrin-1, BDNF, Sema3A) show distinct signatures with more than 100 different nascent protein species up- or downregulated within the first 5 min followed by further dynamic remodeling. Switching repulsion to attraction triggers opposite regulation of a subset of common nascent proteins. Our findings thus reveal the rapid remodeling of the axonal proteomic landscape by extrinsic cues and uncover a logic underlying attraction versus repulsion
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