ordered_transcriptome_trinity.txt

This is the genetic map used to position genes and SNPs. Column 1 refers to the contig name, column 2 to the chromosome number and column 3 to the position in centimorgan

table_S1_24_02_15

Table S1 with information about samples (location, sequencing stats, etc.

new_sift_results_all

Results of SIFT analyses identifying deleterious non-synonymous mutations. First column identifies the non-synonymous AA changes and their positions (e.g. S11T). Column 2-6 are the SIFT statistics. Last column are the name of the genes

HA412_trinity_noAltSplice_400bpmin.fa

Link to reference transcriptome described in Renaut et al. 2013 (NatCom), used for all alignments, and previously deposited in Dryad as part of http://dx.doi.org/10.5061/dryad.9q1n4

new_snp_table_effect

List of all SNPs. Column 4-43 indicate whether this SNP was noncoding (nc), non-synonymous (ns), synonymous (s), alternate stop codon (STOP), or homozygous reference allele (0). Column 44 indicates whether this mutation was analyzed by PROVEAN. Column 45 indicates PROVEAN score, if applicable. Column 46-50 indicate frequency of alternate allele in different classes of individuals

unique_orf

Unique (longest) open reading frames identified in the reference transcriptom

snp_table_all3

Genotypes and positions of all SNPs identified in the dataset

dryad_datasets_2010_2016_update_2017

We downloaded the reference information for all packages published between 2010-2016 on datadryad.org. This information was retrieved in January-February 2017

deb_arg_fst_map

SNP table for H.debilis - H. argophyllus comparison. This table also contain Fst ("Fst" column) values for each SNP and the position ("map_centiMorgan") and chromosome number ("LG") were SNPs are found

pet_arg_fst_map

SNP table for H. petiolaris -H. argophyllus comparison. This table also contain Fst ("Fst" column) values for each SNP and the position ("map_centiMorgan") and chromosome number ("LG") were SNPs are found