Equivalent Radar Cross Section: What Is It and Why Is It Important?

The goal of radiometric calibration in synthetic aperture radar (SAR) is to achieve comparability between measurement results acquired with different systems (e.g. RADARSAT-2 and Sentinel-1), at different times (e.g. image stacks over many years), or with different system settings (e.g. center frequency or polarization). At the beginning of the calibration process stands the definition of the measurement quantity. We argue that the currently accepted measurement quantity for point targets, radar cross section (RCS), is not actually the quantity that a SAR system measures, and propose to replace the quantity with equivalent radar cross section (ERCS): The equivalent radar cross section (ERCS) shall be equal to the radar cross section of a perfectly conducting sphere which would result in an equivalent pixel intensity if the sphere were to replace the measured target. The concept “ERCS” has been introduced before [1]. In this presentation, we attempt to communicate the problem from different angles to make it more easily comprehensible and to contribute to a discussion in the CEOS community on a new definition of the radiometric measurement quantity in SAR. These topics are: • Mathematical view: By reviewing the basic SAR convolution integral and the definition of RCS it becomes obvious why RCS cannot be the radiometric measurement quantity in SAR. • Historical view: Considering early, comparably low resolution SAR systems with narrow bandwidths and small angular ranges, it is apparent why RCS has been an acceptable quantity in the past. The advancement towards higher accuracy and higher resolution systems makes a distinction between RCS and ERCS paramount though for today’s and tomorrow’s systems. • Comparison with black bodies: The radiation characteristics of certain surfaces are completely specified if their temperature is known. These black bodies do not exist in nature; they are an idealization. The blackbody radiation at a given wavelength depends only on the temperature. A single number (the brightness temperature) is therefore sufficient to summarize the complex Planck spectrum of a blackbody. This is similar to a large, perfectly conducting sphere in SAR which is used as an idealized object in the ERCS definition. A single number (the sphere’s cross sectional area) summarizes its properties. • Comparison with stellar photometry: In the 18 th century, different astronomers used different optical equipment to measure and compare the brightness of stars. Due to varying passbands (transfer functions) of lenses and photographic film, the results were not comparable. The problem was later solved by introducing standard photometric systems, where the passbands of the used equipment is standardized and calibrated. A comparable interaction exists between a SAR instrument and the measured terrain reflectivity due to the convolution operation in the processor. This we call the SAR passband problem [2]. We propose a similar approach to resolve the SAR passband problem by introducing standardized passbands (weighting/apodization functions at defined bandwidths). By adopting ERCS as the measurement quantity in the future, calibration and measurement results become truly compatible across current and future narrow and particularly wideband, high-resolution, and high- accuracy SAR systems

Accurate Transponder Calibrations with the Novel Three-Transponder Method

Transponders are, besides trihedral corner reflectors, the most commonly used measurement standards in radiometric SAR calibration. They allow signal recording for the reconstruction of the azimuth pattern of the SAR system, adjustments of the backscattering matrix for polarimetric applications, and radar cross sections (RCSs) which are potentially much larger than those of passive point targets. These advantages led DLR to develop, manufacture, and install three new, accurate C-band “Kalibri” transponders in South Germany, which are now being used for the calibration and monitoring of the Copernicus Sentinel-1A satellite. Before the transponders could be used as radiometric measurement standards, they needed to be calibrated themselves. In an effort to find the most accurate RCS calibration approach for the given transponder design, several existing methods were compared [1], and a new, potentially highly accurate method, devised which exploits the specific design of the Kalibri transponders [2]. The new “three-transponder method” is similar in principle to the known “three-antenna method”, but is based on the radar equation instead of the Friis transmission formula. The approach exploits the fact that modern transponders like the “Kalibri” device can also be operated as radars because of the integrated digital sub-system (which is needed to implement a digital delay line and incorporates an AD and DA converter). To conduct a complete measurement, three transponders and three measurements (with one transponder pair each) are required; refined measurement schemas are also possible. In comparison to existing methods, no additional radiometric measurement standard is needed, which so far has been one of the limiting factors in accomplishing lower calibration uncertainties. Measurement traceability is achieved by tracing a comparatively simple length measurement back to a national realization of the meter. Such a length measurements can be performed with high accuracy. The presentation will include the setup and the measurement results of a first demonstration measurement campaign. Despite remaining challenges in the practical implementation, the uncertainty analysis shows that the method is a good candidate for highly accurate transponder RCS calibrations in the future

Altered expression of genes implicated in xylan biosynthesis affects penetration resistance against powdery mildew

Heteroxylan has recently been identified as an important component of papillae, which are formed during powdery mildew infection of barley leaves. Deposition of heteroxylan near the sites of attempted fungal penetration in the epidermal cell wall is believed to enhance the physical resistance to the fungal penetration peg and hence to improve pre-invasion resistance. Several glycosyltransferase (GT) families are implicated in the assembly of heteroxylan in the plant cell wall, and are likely to work together in a multi-enzyme complex. Members of key GT families reported to be involved in heteroxylan biosynthesis are up-regulated in the epidermal layer of barley leaves during powdery mildew infection. Modulation of their expression leads to altered susceptibility levels, suggesting that these genes are important for penetration resistance. The highest level of resistance was achieved when a GT43 gene was co-expressed with a GT47 candidate gene, both of which have been predicted to be involved in xylan backbone biosynthesis. Altering the expression level of several candidate heteroxylan synthesis genes can significantly alter disease susceptibility. This is predicted to occur through changes in the amount and structure of heteroxylan in barley papillae.Jamil Chowdhury, Stefanie Lück, Jeyaraman Rajaraman, Dimitar Douchkov, Neil J. Shirley, Julian G. Schwerdt, Patrick Schweizer, Geoffrey B. Fincher, Rachel A. Burton and Alan Littl

Phylogenomic analyses of nucleotide-sugar biosynthetic and interconverting enzymes illuminate cell wall composition in fungi

The fungi are an enormously successful eukaryotic lineage that has colonized every aerobic habitat on Earth. This spectacular expansion is reflected in the dynamism and diversity of the fungal cell wall, a matrix of polysaccharides and glycoproteins pivotal to fungal life history strategies and a major target in the development of antifungal compounds. Cell wall polysaccharides are typically synthesized by Leloir glycosyltransferases, enzymes that are notoriously difficult to characterize, but their nucleotide-sugar substrates are well known and provide the opportunity to inspect the monosaccharides available for incorporation into cell wall polysaccharides and glycoproteins. In this work, we have used phylogenomic analyses of the enzymatic pathways that synthesize and interconvert nucleotide-sugars to predict potential cell wall monosaccharide composition across 491 fungal taxa. The results show a complex evolutionary history of these cell wall enzyme pathways and, by association, of the fungal cell wall. In particular, we see a significant reduction in monosaccharide diversity during fungal evolution, most notably in the colonization of terrestrial habitats. However, monosaccharide distribution is also shown to be varied across later-diverging fungal lineages.IMPORTANCE This study provides new insights into the complex evolutionary history of the fungal cell wall. We analyzed fungal enzymes that convert sugars acquired from the environment into the diverse sugars that make up the fundamental building blocks of the cell wall. Species-specific profiles of these nucleotide-sugar interconverting (NSI) enzymes for 491 fungi demonstrated multiple losses and gains of NSI proteins, revealing the rich diversity of cell wall architecture across the kingdom. Pragmatically, because cell walls are essential to fungi, our observations of variation in sugar diversity have important implications for the development of antifungal compounds that target the sugar profiles of specific pathogens.Julian Schwerdt, Hao Qiu, Neil Shirley, Alan Little, Vincent Bulon

Long-term dopamine neurochemical monitoring in primates

Many debilitating neuropsychiatric and neurodegenerative disorders are characterized by dopamine neurotransmitter dysregulation. Monitoring subsecond dopamine release accurately and for extended, clinically relevant timescales is a critical unmet need. Especially valuable has been the development of electrochemical fast-scan cyclic voltammetry implementing microsized carbon fiber probe implants to record fast millisecond changes in dopamine concentrations. Nevertheless, these well-established methods have only been applied in primates with acutely (few hours) implanted sensors. Neurochemical monitoring for long timescales is necessary to improve diagnostic and therapeutic procedures for a wide range of neurological disorders. Strategies for the chronic use of such sensors have recently been established successfully in rodents, but new infrastructures are needed to enable these strategies in primates. Here we report an integrated neurochemical recording platform for monitoring dopamine release from sensors chronically implanted in deep brain structures of nonhuman primates for over 100 days, together with results for behavior-related and stimulation-induced dopamine release. From these chronically implanted probes, we measured dopamine release from multiple sites in the striatum as induced by behavioral performance and reward-related stimuli, by direct stimulation, and by drug administration. We further developed algorithms to automate detection of dopamine. These algorithms could be used to track the effects of drugs on endogenous dopamine neurotransmission, as well as to evaluate the long-term performance of the chronically implanted sensors. Our chronic measurements demonstrate the feasibility of measuring subsecond dopamine release from deep brain circuits of awake, behaving primates in a longitudinally reproducible manner. Keywords: striatum; voltammetry; neurotransmitters; chronic implantsNational Institute of Neurological Diseases and Stroke (U.S.) (Grant R01 NS025529)National Institute of Neurological Diseases and Stroke (U.S.) (Grant F32 NS093897)United States. Army Research Office (Contract W911NF-16-1-0474)National Institute of Biomedical Imaging and Bioengineering (U.S.) (Grant R01 EB016101

Genetics and physiology of cell wall polysaccharides in the model C(4) grass, Setaria viridis spp

Published: 2 October 2015BACKGROUND: Setaria viridis has emerged as a model species for the larger C4 grasses. Here the cellulose synthase (CesA) superfamily has been defined, with an emphasis on the amounts and distribution of (1,3;1,4)-β-glucan, a cell wall polysaccharide that is characteristic of the grasses and is of considerable value for human health. METHODS: Orthologous relationship of the CesA and Poales-specific cellulose synthase-like (Csl) genes among Setaria italica (Si), Sorghum bicolor (Sb), Oryza sativa (Os), Brachypodium distachyon (Bradi) and Hordeum vulgare (Hv) were compared using bioinformatics analysis. Transcription profiling of Csl gene families, which are involved in (1,3;1,4)-β-glucan synthesis, was performed using real-time quantitative PCR (Q-PCR). The amount of (1,3;1,4)-β-glucan was measured using a modified Megazyme assay. The fine structures of the (1,3;1,4)-β-glucan, as denoted by the ratio of cellotriosyl to cellotetraosyl residues (DP3:DP4 ratio) was assessed by chromatography (HPLC and HPAEC-PAD). The distribution and deposition of the MLG was examined using the specific antibody BG-1 and captured using fluorescence and transmission electron microscopy (TEM). RESULTS: The cellulose synthase gene superfamily contains 13 CesA and 35 Csl genes in Setaria. Transcript profiling of CslF, CslH and CslJ gene families across a vegetative tissue series indicated that SvCslF6 transcripts were the most abundant relative to all other Csl transcripts. The amounts of (1,3;1,4)-β-glucan in Setaria vegetative tissues ranged from 0.2% to 2.9% w/w with much smaller amounts in developing grain (0.003% to 0.013% w/w). In general, the amount of (1,3;1,4)-β-glucan was greater in younger than in older tissues. The DP3:DP4 ratios varied between tissue types and across developmental stages, and ranged from 2.4 to 3.0:1. The DP3:DP4 ratios in developing grain ranged from 2.5 to 2.8:1. Micrographs revealing the distribution of (1,3;1,4)-β-glucan in walls of different cell types and the data were consistent with the quantitative (1,3;1,4)-β-glucan assays. CONCLUSION: The characteristics of the cellulose synthase gene superfamily and the accumulation and distribution of (1,3;1,4)-β-glucans in Setaria are similar to those in other C4 grasses, including sorghum. This suggests that Setaria is a suitable model plant for cell wall polysaccharide biology in C4 grasses.Riksfardini A. Ermawar, Helen M. Collins, Caitlin S. Byrt, Marilyn Henderson, Lisa A. O'Donovan, Neil J. Shirley, Julian G. Schwerdt, Jelle Lahnstein, Geoffrey B. Fincher and Rachel A. Burto

How to survey displaced workers in Switzerland ? Sources of bias and ways around them

Studying career outcomes after job loss is challenging because individually displaced worker form a self-selected group. Indeed, the same factors causing the workers to lose their jobs, such as lack of motivation, may also reduce their re-employment prospects. Using data from plant closures where all workers were displaced irrespective of their individual characteristics offers a way around this selection bias. There is no systematic data collection on workers displaced by plant closure in Switzerland. Accordingly, we conducted our own survey on 1200 manufacturing workers who had lost their job 2 years earlier. The analysis of observational data gives rise to a set of methodological challenges, in particular nonresponse bias. Our survey addressed this issue by mixing data collection modes and repeating contact attempts. In addition, we combined the survey data with data from the public unemployment register to examine the extent of nonresponse bias. Our analysis suggests that some of our adjustments helped to reduce bias. Repeated contact attempts increased the response rate, but did not reduce nonresponse bias. In contrast, using telephone interviews in addition to paper questionnaires helped to substantially improve the participation of typically underrepresented subgroups. However, the survey respondents still differ from nonrespondents in terms of age, education and occupation. Interestingly, these differences have no significant impact on the substantial conclusion about displaced workers' re-employment prospects

The Wage and Non-wage Costs of Displacement: Evidence from Russia

This paper is the first to analyze the costs of job loss in Russia, using unique new data from the Russian Longitudinal Monitoring Survey over the years 2003-2008, including a special supplement on displacement that was initiated by us. We employ fixed effects regression models and propensity score matching techniques in order to establish the causal effect of displacement for displaced individuals. The paper is innovative insofar as we investigate fringe and in-kind benefits and the propensity to have an informal employment relationship as well as a permanent contract as relevant labor market outcomes upon displacement. We also analyze monthly earnings, hourly wages, employment and hours worked, which are traditionally investigated in the literature. Compared to the control group of non-displaced workers (i.e. stayers and quitters), displaced individuals face a significant income loss following displacement, which is mainly due to the reduction in employment and hours worked. This effect is robust to the definition of displacement. The losses seem to be more pronounced and are especially large for older workers with labor market experience and human capital acquired in Soviet times and for workers with primary and secondary education. Workers displaced from state firms experience particularly large relative losses in the short run, while such losses for workers laid off from private firms are more persistent. Turning to the additional non-conventional labor market outcomes, there is a loss in terms of the number of fringe and in-kind benefits for reemployed individuals but not in terms of their value. There is also some evidence of an increased probability of working in informal jobs if displaced. These results point towards the importance of both firm-specific human capital and of obsolete skills obtained under the centrally planned economy as well as to a wider occurrence of job insecurity among displaced workers

A novel (1,4)-beta-linked glucoxylan is synthesized by members of the cellulose synthase-like F gene family in land plants

As a significant component of monocot cell walls, (1,3;1,4)-β-glucan has conclusively been shown to be synthesized by the cellulose synthase-like F6 protein. In this study, we investigated the synthetic activity of other members of the barley (Hordeum vulgare) CslF gene family using heterologous expression. As expected, the majority of the genes encode proteins that are capable of synthesizing detectable levels of (1,3;1,4)-β-glucan. However, overexpression of HvCslF3 and HvCslF10 genes resulted in the synthesis of a novel linear glucoxylan that consists of (1,4)-β-linked glucose and xylose residues. To demonstrate that this product was not an aberration of the heterologous system, the characteristic (1,4)-β-linkage between glucose and xylose was confirmed to be present in wild type barley tissues known to contain HvCslF3 and HvCslF10 transcripts. This polysaccharide linkage has also been reported in species of Ulva, a marine green alga, and has significant implications for defining the specificity of the cell wall content of many crop species. This finding supports previous observations that members of a single CSL family may not possess the same carbohydrate synthetic activity, with the CSLF family now associated with the formation of not only (1,3)- and (1,4)-β-glucosidic linkages, but also (1,4)-β-glucosidic and (1,4)-β-xylosidic linkages.Alan Little, Jelle Lahnstein, David W. Jeffery, Shi F. Khor, Julian G. Schwerdt, Neil J. Shirley, Michelle Hooi, Xiaohui Xing, Rachel A. Burton, and Vincent Bulon

Transcript Profiling of MIKCc MADS-Box Genes Reveals Conserved and Novel Roles in Barley Inflorescence Development

MADS-box genes have a wide range of functions in plant reproductive development and grain production. The ABCDE model of floral organ development shows that MADS-box genes are central players in these events in dicotyledonous plants but the applicability of this model remains largely unknown in many grass crops. Here, we show that transcript analysis of all MIKCc MADS-box genes through barley (Hordeum vulgare L.) inflorescence development reveals co-expression groups that can be linked to developmental events. Thirty-four MIKCc MADS-box genes were identified in the barley genome and single-nucleotide polymorphism (SNP) scanning of 22,626 barley varieties revealed that the natural variation in the coding regions of these genes is low and the sequences have been extremely conserved during barley domestication. More detailed transcript analysis showed that MADS-box genes are generally expressed at key inflorescence developmental phases and across various floral organs in barley, as predicted by the ABCDE model. However, expression patterns of some MADS genes, for example HvMADS58 (AGAMOUS subfamily) and HvMADS34 (SEPALLATA subfamily), clearly deviate from predicted patterns. This places them outside the scope of the classical ABCDE model of floral development and demonstrates that the central tenet of antagonism between A- and C-class gene expression in the ABC model of other plants does not occur in barley. Co-expression across three correlation sets showed that specifically grouped members of the barley MIKCc MADS-box genes are likely to be involved in developmental events driving inflorescence meristem initiation, floral meristem identity and floral organ determination. Based on these observations, we propose a potential floral ABCDE working model in barley, where the classic model is generally upheld, but that also provides new insights into the role of MIKCc MADS-box genes in the developing barley inflorescence.Hendrik N. J. Kuijer, Neil J. Shirley, Shi F. Khor, Jin Shi, Julian Schwerdt, Dabing Zhang, Gang Li, and Rachel A. Burto