An ectobiont-bearing foraminiferan, Bolivina pacifica, that inhabits microxic pore waters : cell-biological and paleoceanographic insights

Author Posting. © The Author(s), 2009. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Environmental Microbiology 12 (2010): 2107-2119, doi:10.1111/j.1462-2920.2009.02073.x.The presence of tests (shells) in foraminifera could be taken as an indicator that this protist taxon is unlikely to possess ectosymbionts. Here, however, we describe an association between Bolivina pacifica, a foraminiferan with a calcareous test, and a rod-shaped microbe (bacterium or archaeon) that is directly associated with the pores of the foraminiferan’s test. In addition to these putative ectosymbionts, B. pacifica has previously undescribed cytoplasmic plasma membrane invaginations (PMIs). These adaptations (i.e., PMIs, ectobionts), along with the clustering of mitochondria under the pores and at the cell periphery, suggest active exchange between the host and ectobiont. The B. pacifica specimens examined were collected from sediments overlain by oxygen-depleted bottom waters (0.7 μM) of the Santa Barbara Basin (SBB; California, USA). An ultrastructural comparison between B. pacifica from the SBB and a congener (Bolivina cf. B. lanceolata) collected from well-oxygenated sediments (Florida Keys) suggests that PMIs, ectobionts, and peripherally distributed mitochondria are all factors that promote inhabitation of microxic environments by B. pacifica. The calcitic δ13C signatures of B. pacifica and a of co-occurring congener (B. argentea) that lacks ectobionts differ by >1.5‰, raising the possibility that the presence of ectobionts can affect incorporation of paleoceanographic proxies.This work was supported by a W. Storrs Cole Memorial Research Award through the Geological Society of America (to JMB), as well as by NASA Exobiology NRA-01-01-EXB-057 (to JMB), NSF MCB-0702491 (to JMB), and NSF DEB0445181 (to SSB and STG)

Molecular evolution of foraminiferal tubulins

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Hidden diversity of allogromiid foraminiferans in low-latitude environments

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Allogromiid test construction

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Trophic modes of large Antarctic Foraminifera: roles of carnivory, omnivory, and detritivory

Astrammina rara, Crithionina delacai, and Notodendrodes hyalinosphaira are 3 of the largest and most abundant members of the foraminiferal assemblage at a shallow-water (28 to 32 m) site in Explorers Cove, Antarctica. This study summarizes observations from 2 decades of research, during which we employed laboratory-based feeding experiments and fatty acid biomarker analysis to characterize trophic dynamics and ecological roles of the 3 species, In feeding experiments, A. rara consumed a variety of co-occurring metazoans (several Crustacea, Mollusca, Echinodermata, and a Nephtys species). C. delacai, N. hyalinosphaira, and a number of other foraminiferal species from Explorers Cove successfully trapped Artemia sp. nauplius prey in a setup designed to examine the efficiency of prey capture. Fatty acid analyses on samples from early (November 7, 2001) and late (January 31, 2002) austral summer revealed that the 3 species contained substantial amounts (33 to 45.5%) of polyunsaturated fatty acids (PUFAs), which are produced by microalgae, indicating the downwards transfer of carbon from sea-ice associated primary production. In the case of A. rara, this may be due to the ingestion of herbivorous metazoa, rather than direct uptake of microalgal material. A. rara contained significantly (p < 0.05) higher amounts of the zooplankton biomarkers 20:1(n-9) and 22:1(n-11), and C. delacai contained more PUFAs early, compared to late, in the season. Two morphotypes of N. hyalinosphaira had different fatty acid Profiles, indicating distinct trophotypes. Our results illustrate specific adaptations to different trophic resources in these protists, and they demonstrate the potential impact that large carnivorous species of Foraminifera may have on the structure of benthic communities where they are abundant

Distribution of two notodendrodid foraminiferal congeners in McMurdo Sound, Antarctica: an example of extreme regional endemism?

We used morphological and molecular surveys to determine the presence or absence of Notodendrodes antarctikos and its congener, Notodendrodes hyalinosphaira, at diverse sites within McMurdo Sound, Antarctica. Morphological surveys were performed using shipboard box-core sampling, as well as handheld coring and visual inspection by divers in shallow (< 23 m) waters. Concurrent molecular analyses were performed using species- and genus-specific PCR primers on environmental DNA extracts. Both survey methods show that N. hyalinosphaira is widely distributed in the region but that N. antarctikos was not detected outside its originally reported range. The survey methods show complementary strengths and weaknesses, with morphological detection being more sensitive in areas where large and distinctive adult forms are present and with molecular detection being more effective for identification of presumed juvenile or propagule stages. Our results suggest that N. antarctikos is a highly endemic protist and may have one of the most restricted ranges ever reported for an Antarctic organism

High-throughput sequencing of Astrammina rara: Sampling the giant genome of a giant foraminiferan protist

<p>Abstract</p> <p>Background</p> <p>Foraminiferan protists, which are significant players in most marine ecosystems, are also genetic innovators, harboring unique modifications to proteins that make up the basic eukaryotic cell machinery. Despite their ecological and evolutionary importance, foraminiferan genomes are poorly understood due to the extreme sequence divergence of many genes and the difficulty of obtaining pure samples: exogenous DNA from ingested food or ecto/endo symbionts often vastly exceed the amount of "native" DNA, and foraminiferans cannot be cultured axenically. Few foraminiferal genes have been sequenced from genomic material, although partial sequences of coding regions have been determined by EST studies and mass spectroscopy. The lack of genomic data has impeded evolutionary and cell-biology studies and has also hindered our ability to test ecological hypotheses using genetic tools.</p> <p>Results</p> <p>454 sequence analysis was performed on a library derived from whole genome amplification of microdissected nuclei of the Antarctic foraminiferan <it>Astrammina rara</it>. Xenogenomic sequence, which was shown not to be of eukaryotic origin, represented only 12% of the sample. The first foraminiferal examples of important classes of genes, such as tRNA genes, are reported, and we present evidence that sequences of mitochondrial origin have been translocated to the nucleus. The recovery of a 3' UTR and downstream sequence from an actin gene suggests that foraminiferal mRNA processing may have some unusual features. Finally, the presence of a co-purified bacterial genome in the library also permitted the first calculation of the size of a foraminiferal genome by molecular methods, and statistical analysis of sequence from different genomic sources indicates that low-complexity tracts of the genome may be endoreplicated in some stages of the foraminiferal life cycle.</p> <p>Conclusions</p> <p>These data provide the first window into genomic organization and genetic control in these organisms, and also complement and expands upon information about foraminiferal genes based on EST projects. The genomic data obtained are informative for environmental and cell-biological studies, and will also be useful for efforts to understand relationships between foraminiferans and other protists.</p

Стратегии и тактики речевого воздействия в русском и французском Интернет-дискурсе (на материале корпоративных веб-сайтов)

Данная работа посвящена исследованию речевого воздействия в текстах деловой коммуникации корпоративных веб-сайтов Интернет - дискурса. Целью данного исследования является выявление стратегий и тактик речевого воздействия в русском и французском Интернет-дискурсе.This thesis work is devoted to the study of speech influence in the texts of business communication of corporate websites of Internet-discourse. The purpose of this study is to identify strategies and tactics of speech influence in Russian and French Internet-discourse

ADAM8 signaling drives neutrophil migration and ARDS severity

Acute respiratory distress syndrome (ARDS) results in catastrophic lung failure and has an urgent, unmet need for improved early recognition and therapeutic development. Neutrophil influx is a hallmark of ARDS and is associated with the release of tissue-destructive immune effectors, such as matrix metalloproteinases (MMPs) and membrane-anchored metalloproteinase disintegrins (ADAMs). Here, we observed using intravital microscopy that Adam8–/– mice had impaired neutrophil transmigration. In mouse pneumonia models, both genetic deletion and pharmacologic inhibition of ADAM8 attenuated neutrophil infiltration and lung injury while improving bacterial containment. Unexpectedly, the alterations of neutrophil function were not attributable to impaired proteolysis but resulted from reduced intracellular interactions of ADAM8 with the actin-based motor molecule Myosin1f that suppressed neutrophil motility. In 2 ARDS cohorts, we analyzed lung fluid proteolytic signatures and identified that ADAM8 activity was positively correlated with disease severity. We propose that in acute inflammatory lung diseases such as pneumonia and ARDS, ADAM8 inhibition might allow fine-tuning of neutrophil responses for therapeutic gain