Interaction between local hydrodynamics and algal community in epilithic biofilm

Interactions between epilithic biofilm and local hydrodynamics were investigated in an experimental flume. Epilithic biofilm from a natural river was grown over a 41 day period in three sections with different flow velocities (0.10, 0.25 and 0.40 m s-¹ noted LV, IV and HV respectively). Friction velocities u* and boundary layer parameters were inferred from PIV measurement in the three sections and related to the biofilm structure. The results show that there were no significant differences in Dry Mass and Ash-Free Dry Mass (g m-²) at the end of experiment, but velocity is a selective factor in algal composition and the biofilms' morphology differed according to differences in water velocity. A hierarchical agglomerative cluster analysis (BrayeCurtis distances) and an Indicator Species Analysis (IndVal) showed that the indicator taxa were Fragilaria capucina var. mesolepta in the lowvelocity (u* = ¼ 0.010e0.012 m s-¹), Navicula atomus, Navicula capitatoradiata and Nitzschia frustulum in the intermediate velocity (u* = ¼ 0.023e0.030 m s-¹) and Amphora pediculus, Cymbella proxima, Fragilaria capucina var. vaucheriae and Surirella angusta in the high-velocity (u* = ¼ 0.033e0.050m s-¹) sections. A sloughing test was performed on 40-day-old biofilms in order to study the resistance of epilithic biofilms to higher hydrodynamic regimes. The results showed an inverse relationship between the proportion of detached biomass and the average value of friction velocity during growth. Therefore, water velocity during epilithic biofilm growth conditioned the structure and algal composition of biofilm, as well as its response (ability to resist) to higher shear stresses. This result should be considered in modelling epilithic biofilm dynamics in streams subject to a variable hydrodynamics regime

Herbicide accumulation and evolution in reservoir sediments

The aim of the present study was to understand the effect of reservoir configurations on sediment pesticide fate. Two dams were selected on the River Garonne, in southwest France: Carbonne and Golfech, both with reservoirs subject to accumulation of herbicide-contaminated sediment. They are situated upstream and downstream respectively of an agricultural and urban area: the Mid-Garonne. The results presented include pesticide concentrations and C/N ratios in the smaller sediment particles (b2 mm) and values of oxygenation and herbicide concentrations in the water. The dynamic behaviour of sediment in the reservoirs is discussed. The present study shows that the theoretical lifespan (weak remanence in vitro) and the results actually observed in the sediment are conflicting. Pesticide contamination in Carbonne indicates conservation, even accumulation, of herbicide molecules while in Golfech transformation processes clearly dominate. The hydromorphological position of Golfech reservoir, i.e. located at the junction of two rivers with contrasting hydrological regimes and very different oxygenation conditions, leads to accelerated pesticide desorption or degradation. Unfortunately, this configuration is rare

Deciphering hybrid larch reaction norms using random regression

The link between phenotypic plasticity and heterosis is a broad fundamental question, with stakes in breeding. We report a case-study evaluating temporal series of wood ring traits of hybrid larch (Larix decidua × L. kaempferi and reciprocal) in relation to soil water availability. Growth rings record the tree plastic responses to past environmental conditions, and we used random regressions to estimate the reaction norms of ring width and wood density with respect to water availability. We investigated the role of phenotypic plasticity on the construction of hybrid larch heterosis and on the expression of its quantitative genetic parameters. The data came from an intra-/interspecific diallel mating design between both parental species. Progenies were grown in two environmentally contrasted sites, in France. Ring width plasticity with respect to water availability was confirmed, as all three taxa produced narrower rings under the lowest water availability. Hybrid larch appeared to be the most plastic taxon as its superiority over its parental species increased with increasing water availability. Despite the low heritabilities of the investigated traits, we found that the expression of a reliable negative correlation between them was conditional to the water availability environment. Finally, by means of a complementary simulation, we demonstrated that random regression can be applied to model the reaction norms of non-repeated records of phenotypic plasticity bound by a family structure. Random regression is a powerful tool for the modeling of reaction norms in various contexts, especially perennial species

Deciphering the Molecular Basis of Wine Yeast Fermentation Traits Using a Combined Genetic and Genomic Approach

The genetic basis of the phenotypic diversity of yeast is still poorly understood. Wine yeast strains have specific abilities to grow and ferment under stressful conditions compared with other strains, but the genetic basis underlying these traits is unknown. Understanding how sequence variation influences such phenotypes is a major challenge to address adaptation mechanisms of wine yeast. We aimed to identify the genetic basis of fermentation traits and gain insight into their relationships with variations in gene expression among yeast strains. We combined fermentation trait QTL mapping and expression profiling of fermenting cells in a segregating population from a cross between a wine yeast derivative and a laboratory strain. We report the identification of QTL for various fermentation traits (fermentation rates, nitrogen utilization, metabolites production) as well as expression QTL (eQTL). We found that many transcripts mapped to several eQTL hotspots and that two of them overlapped with QTL for fermentation traits. A QTL controlling the maximal fermentation rate and nitrogen utilization overlapping with an eQTL hotspot was dissected. We functionally demonstrated that an allele of the ABZ1 gene, localized in the hotspot and involved in p-aminobenzoate biosynthesis, controls the fermentation rate through modulation of nitrogen utilization. Our data suggest that the laboratory strain harbors a defective ABZ1 allele, which triggers strong metabolic and physiological alterations responsible for the generation of the eQTL hotspot. They also suggest that a number of gene expression differences result from some alleles that trigger major physiological disturbances

Expression, purification, crystallization and preliminary X-ray analysis of the cathelicidin motif of the protegrin-3 precursor

International audienc

Role of local flow conditions in river biofilm colonization and early growth

Direct numerical simulations of a turbulent boundary layer flow over a bed of hemispheres of height h are performed using an immersed boundary method for comparison with river biofilm growth experiments performed in a hydraulic flume. Flow statistics above the substrates are shown to be in agreement with measurements performed by laser Doppler velocimetry and particle image velocimetry in the experiments. Numerical simulations give access to flow components inside the roughness sublayer, and biofilm colonization patterns found in the experiments are shown to be associated with low shear stress regions on the hemisphere surface. Two bed configurations, namely staggered and aligned configurations, lead to different colonization patterns because of differences in the local flow topology. Dependence with the Reynolds number of the biofilm distribution and accrual 7 days after inoculum is shown to be associated to local flow topology change and shear stress intensity. In particular, the shear stress τ on the surface of the hemispheres is found to scale as µ(u*/h)Ret0.26 where Ret = u∗h/ν, with u* as the log law friction velocity and ν as the fluid kinematic viscosity. This scaling is due to the development of boundary layers along the hemisphere surface. Associated with a critical shear stress for colonization and early growth, it explains the increasing delay in biomass accrual for increasing flow velocities in the experiments