S7 sequence nexus file for Gadopsis and outgroups

S7 sequence nexus file for Gadopsis and outgroup

*beast xml file for Gadopsis (S7 and cytb)

The codes for each OTU are in the readme file. The first number is the population, the second is the name of the population and the third is the specific individual

GARLI configuration file for bootstrapping

Settings used to generate 250 ML bootstrap replicates in GARLI. This example is for cytb, but the settings were the same for each of the three datasets analysed except the number of attachments (which was twice the number of OTUs), outgroup and the model of sequence evolution

Cytochrome b nexus file for Gadopsis

Cytochrome b nexus file for Gadopsi

Combined Cytochrome b and S7 sequence data in nexus format

The codes for each OTU are in the readme file. The first number is the population, the second is the name of the population and the third is the specific individual. Note that the readme file contains the codes for samples that are not in the nexus file

GARLI configuration file for best tree

Settings used to generate the best ML tree in GARLI. This example is for cytb, but the settings were the same for each of the three datasets analysed except the number of attachments (which was twice the number of OTUs), outgroup and the model of sequence evolution

ORF_counts

Raw counts data for 27,425 longest open reading frame

TMM_ORF_counts

cross sample normalized counts for 27,425 ORF

Nannoperca australis liver transcriptome

Nannoperca australis liver transcriptome assembled using Trinity based on RNAseq data from five individuals. Assembly contains 201,037 Trinity transcripts clustered into 96,717 Trinity "genes"

Microsatellite genotypes

Microsatellite genotypes for all sampled populations and individual