Abstract Interfaces for Data Analysis: Component Architecture for Data Analysis Tools

The fast turnover of software technologies, in particular in the domain of interactivity (covering user interface and visualisation), makes it difficult for a small group of people to produce complete and polished software-tools before the underlying technologies make them obsolete. At the HepVis '99 workshop, a working group has been formed to improve the production of software tools for data analysis in HENP. Beside promoting a distributed development organisation, one goal of the group is to systematically design a set of abstract interfaces based on using modern OO analysis and OO design techniques. An initial domain analysis has come up with several categories (components) found in typical data analysis tools: Histograms, Ntuples, Functions, Vectors, Fitter, Plotter, Analyzer and Controller. Special emphasis was put on reducing the couplings between the categories to a minimum, thus optimising re-use and maintainability of any component individually. The interfaces have been defined in Java and C++ and implementations exist in the form of libraries and tools using C++ (Anaphe/Lizard, OpenScientist) and Java (Java Analysis Studio). A special implementation aims at accessing the Java libraries (through their Abstract Interfaces) from C++. This paper gives an overview of the architecture and design of the various components for data analysis as discussed in AIDA

Trends in Antarctic Peninsula surface melting conditions from observations and regional climate modeling

Multidecadal meteorological station records and microwave backscatter time-series from the SeaWinds scatterometer onboard QuikSCAT (QSCAT) were used to calculate temporal and spatial trends in surface melting conditions on the Antarctic Peninsula (AP). Four of six long-term station records showed strongly positive and statistically significant trends in duration of melting conditions, including a 95% increase in the average annual positive degree day sum (PDD) at Faraday/Vernadsky, since 1948. A validated, threshold-based melt detection method was employed to derive detailed melt season onset, extent, and duration climatologies on the AP from enhanced resolution QSCAT data during 1999–2009. Austral summer melt on the AP was linked to regional- and synoptic-scale atmospheric variability by respectively correlating melt season onset and extent with November near-surface air temperatures and the October–January averaged index of the Southern Hemisphere Annular Mode (SAM). The spatial pattern, magnitude, and interannual variability of AP melt from observations was closely reproduced by simulations of the regional model RACMO2. Local discrepancies between observations and model simulations were likely a result of the QSCAT response to, and RACMO2 treatment of, ponded surface water, and the relatively crude representation of coastal climate in the 27 km RACMO2 grid

Modelled glacier response to centennial temperature and precipitation trends on the Antarctic Peninsula

The northern Antarctic Peninsula is currently undergoing rapid atmospheric warming. Increased glacier-surface melt during the twentieth century has contributed to ice-shelf collapse and the widespread acceleration, thinning and recession of glaciers. Therefore, glaciers peripheral to the Antarctic Ice Sheet currently make a large contribution to eustatic sea-level rise, but future melting may be offset by increased precipitation. Here we assess glacier-climate relationships both during the past and into the future, using ice-core and geological data and glacier and climate numerical model simulations. Focusing on Glacier IJR45 on James Ross Island, northeast Antarctic Peninsula, our modelling experiments show that this representative glacier is most sensitive to temperature change, not precipitation change. We determine that its most recent expansion occurred during the late Holocene a Little Ice Age' and not during the warmer mid-Holocene, as previously proposed. Simulations using a range of future Intergovernmental Panel on Climate Change climate scenarios indicate that future increases in precipitation are unlikely to offset atmospheric-warming-induced melt of peripheral Antarctic Peninsula glaciers

Changing distributions of sea ice melt and meteoric water west of the Antarctic Peninsula

The Western Antarctic Peninsula has recently undergone rapid climatic warming, with associated decreases in sea ice extent and duration, and increases in precipitation and glacial discharge to the ocean. These shifts in the freshwater budget can have significant consequences on the functioning of the regional ecosystem, feedbacks on regional climate, and sea-level rise. Here we use shelf-wide oxygen isotope data from cruises in four consecutive Januaries (2011–2014) to distinguish the freshwater input from sea ice melt separately from that due to meteoric sources (precipitation plus glacial discharge). Sea ice melt distributions varied from minima in 2011 of around 0 % up to maxima in 2014 of around 4–5%. Meteoric water contribution to the marine environment is typically elevated inshore, due to local glacial discharge and orographic effects on precipitation, but this enhanced contribution was largely absent in January 2013 due to anomalously low precipitation in the last quarter of 2012. Both sea ice melt and meteoric water changes are seen to be strongly influenced by changes in regional wind forcing associated with the Southern Annular Mode and the El Niño–Southern Oscillation phenomenon, which also impact on net sea ice motion as inferred from the isotope data. A near-coastal time series of isotope data collected from Rothera Research Station reproduces well the temporal pattern of changes in sea ice melt, but less well the meteoric water changes, due to local glacial inputs and precipitation effects

Oligomeric Status and Nucleotide Binding Properties of the Plastid ATP/ADP Transporter 1: Toward a Molecular Understanding of the Transport Mechanism

Background: Chloroplast ATP/ADP transporters are essential to energy homeostasis in plant cells. However, their molecular mechanism remains poorly understood, primarily due to the difficulty of producing and purifying functional recombinant forms of these transporters. Methodology/Principal Findings: In this work, we describe an expression and purification protocol providing good yields and efficient solubilization of NTT1 protein from Arabidopsis thaliana. By biochemical and biophysical analyses, we identified the best detergent for solubilization and purification of functional proteins, LAPAO. Purified NTT1 was found to accumulate as two independent pools of well folded, stable monomers and dimers. ATP and ADP binding properties were determined, and Pi, a co-substrate of ADP, was confirmed to be essential for nucleotide steady-state transport. Nucleotide binding studies and analysis of NTT1 mutants lead us to suggest the existence of two distinct and probably inter-dependent binding sites. Finally, fusion and deletion experiments demonstrated that the C-terminus of NTT1 is not essential for multimerization, but probably plays a regulatory role, controlling the nucleotide exchange rate. Conclusions/Significance: Taken together, these data provide a comprehensive molecular characterization of a chloroplas