Time series data (a) incidence and hospital discharge rates of human campylobacteriosis in Scotland, (b) incidence stratified by age, (c) hospitalisation rates stratified by age, (d) number of chicks placed into UK broiler farms and poultry purchases by household, (e)–(h) age stratified incidence associated with foreign travel, use of proton pump inhibitors and the residual (not explained by the former two factors) and (i) urban/rural ratio of incidence aggregated from Health Boards (1990–2011) and postal sectors (2000–2006) with 95% binomial confidence intervals.

<p>Time series data (a) incidence and hospital discharge rates of human campylobacteriosis in Scotland, (b) incidence stratified by age, (c) hospitalisation rates stratified by age, (d) number of chicks placed into UK broiler farms and poultry purchases by household, (e)–(h) age stratified incidence associated with foreign travel, use of proton pump inhibitors and the residual (not explained by the former two factors) and (i) urban/rural ratio of incidence aggregated from Health Boards (1990–2011) and postal sectors (2000–2006) with 95% binomial confidence intervals.</p

A, ClonalFrame tree of <i>C. coli</i> by host (brown – cattle, green – sheep, pink – pigs, yellow – chicken and red – human clinical.

<p>B, probabilistic assignment of the host of human <i>C. coli</i> infections using structure attribution model (four equal sized columns would be expected in the absence of any genetic differentiation by host). C, Simpson’s index of diversity by host.</p

Complete set of available STs for C. jejuni (sequences)

Sequences of every alleles for MLST profiles of 3,834 STs present in the pubMLST Campylobacter database as of the 26th of May 2011 and used in the associated publication

Complete host associations with C. jejuni ST clonal complexes

Complete host associations with C. jejuni ST clonal complexes, using data extracted from pubMLST as of 26th May 2011, used in the associated publication to produce Fig. 1B

Assembled 128 Campylobacter whole genome sequences

128 Campylobacter whole genomes sequenced using a Illumina HiSeq 2000 and assembled using Velvet. Filenames refer to IDs in Table S1 in the associated publication

BIGS_sequences

Whole genome sequencing reads for BIGSdb isolates 1-30 (isolates 26,27,28,29 are already published with accession numbers: NC_009839; NC_008787; NC_003912; NC_002163). For isolates 1-3 de novo 454 sequencing was assembled using Newbler (April 2009). For isolates 4-25 and 30 de novo illumnia sequencing was assembled using Velvet 1.0