Comment on ``Two Time Scales and Violation of the Fluctuation-Dissipation Theorem in a Finite Dimensional Model for Structural Glasses''

In cond-mat/0002074 Ricci-Tersenghi et al. find two linear regimes in the fluctuation-dissipation relation between density-density correlations and associated responses of the Frustrated Ising Lattice Gas. Here we show that this result does not seem to correspond to the equilibrium quantities of the model, by measuring the overlap distribution P(q) of the density and comparing the FDR expected on the ground of the P(q) with the one measured in the off-equilibrium experiments.Comment: RevTeX, 1 page, 2 eps figures, Comment on F. Ricci-Tersenghi et al., Phys. Rev. Lett. 84, 4473 (2000

Mechanics and dynamics of X-chromosome pairing at X inactivation

At the onset of X-chromosome inactivation, the vital process whereby female mammalian cells equalize X products with respect to males, the X chromosomes are colocalized along their Xic (X-inactivation center) regions. The mechanism inducing recognition and pairing of the X’s remains, though, elusive. Starting from recent discoveries on the molecular factors and on the DNA sequences (the so-called "pairing sites") involved, we dissect the mechanical basis of Xic colocalization by using a statistical physics model. We show that soluble DNA-specific binding molecules, such as those experimentally identified, can be indeed sufficient to induce the spontaneous colocalization of the homologous chromosomes but only when their concentration, or chemical affinity, rises above a threshold value as a consequence of a thermodynamic phase transition. We derive the likelihood of pairing and its probability distribution. Chromosome dynamics has two stages: an initial independent Brownian diffusion followed, after a characteristic time scale, by recognition and pairing. Finally, we investigate the effects of DNA deletion/insertions in the region of pairing sites and compare model predictions to available experimental data

Dynamical response functions in models of vibrated granular media

In recently introduced schematic lattice gas models for vibrated dry granular media, we study the dynamical response of the system to small perturbations of shaking amplitudes and its relations with the characteristic fluctuations. Strong off equilibrium features appear and a generalized version of the fluctuation dissipation theorem is introduced. The relations with thermal glassy systems and the role of Edwards' compactivity are discussed.Comment: 12 pages, 2 postscript figure

Internal avalanches in models of granular media

We study the phenomenon of internal avalanching within the context of recently introduced lattice models of granular media. The avalanche is produced by pulling out a grain at the base of the packing and studying how many grains have to rearrange before the packing is once more stable. We find that the avalanches are long-ranged, decaying as a power-law. We study the distriution of avalanches as a function of the density of the packing and find that the avalanche distribution is a very sensitive structural probe of the system.Comment: 12 pages including 9 eps figures, LaTeX. To appear in Fractal

Aging and multiscaling in out of equilibrium dynamical processes in granular media

In the framework of recently introduced frustrated lattice gas models, we study the out of equilibrium dynamical processes during the compaction process in granular media. We find irreversible-reversible cycles in agreement with recent experimental observations. Moreover in analogy with the phenomenology of the glass transition we find aging effects during the compaction process In particular we find that the two time density correlation function $C(t,t')$ asymptotically scales as a function of the single variable $\ln(t')/\ln(t)$. This result is interpreted in terms of multiscaling properties of the system.Comment: 4 page

Off equilibrium magnetic properties in a model for vortices in superconductors

We study the properties of a simple lattice model of repulsive particles diffusing in a pinning landscape. The behaviour of the model is very similar to the observed physics of vortices in superconductors. We compare and discuss the equilibrium phase diagram, creep dynamics, the Bean state profiles, hysteresis of magnetisation loops (including the second peak feature), and, in particular, ``off equilibrium'' relaxations. The model is analytically tractable in replica mean field theory and numerically via Monte Carlo simulations. It offers a comprehensive schematic framework of the observed phenomenology

The jamming transition of Granular Media

We briefly review the basics ideas and results of a recently proposed statistical mechanical approach to granular materials. Using lattice models from standard Statistical Mechanics and results from a mean field replica approach and Monte Carlo simulations we find a jamming transition in granular media closely related to the glass transition in super-cooled liquids. These models reproduce the logarithmic relaxation in granular compaction and reversible-irreversible lines, in agreement with experimental data. The models also exhibit aging effects and breakdown of the usual fluctuation dissipation relation. It is shown that the glass transition may be responsible for the logarithmic relaxation and may be related to the cooperative effects underlying many phenomena of granular materials such as the Reynolds transition.Comment: 18 pages with 6 postscript figures. to appear in J.Phys: Cond. Ma

Two-phase densification of cohesive granular aggregates

When poured into a container, cohesive granular materials form low-density, open granular aggregates. If pressed upon with a ram, these aggregates densify by particle rearrangement. Here we introduce experimental evidence to the effect that particle rearrangement is a spatially heterogeneous phenomenon, which occurs in the form of a phase transformation between two configurational phases of the granular aggregate. We then show that the energy landscape associated with particle rearrangement is consistent with our interpretation of the experimental results. Besides affording insight into the physics of the granular state, our conclusions are relevant to many engineering processes and natural phenomena.Comment: 7 pages, 3 figure

Force correlations and arches formation in granular assemblies

In the context of a simple microscopic schematic scalar model we study the effects of spatial correlations in force transmission in granular assemblies. We show that the parameters of the normalized weights distribution function, $P(v)\sim v^{\alpha}\exp(-v/\phi)$, strongly depend on the spatial extensions, $\xi_V$, of such correlations. We show, then, the connections between measurable macroscopic quantities and microscopic mechanisms enhancing correlations. In particular we evaluate how the exponential cut-off, $\phi(\xi_V)$, and the small forces power law exponent, $\alpha(\xi_V)$, depend on the correlation length, $\xi_V$. If correlations go to infinity, weights are power law distributed.Comment: 6 page

Aging and memory phenomena in magnetic and transport properties of vortex matter: a brief review

There is mounting experimental evidence that strong off-equilibrium phenomena, such as ``memory'' or ``aging'' effects, play a crucial role in the physics of vortices in type II superconductors. We give a short review, based on a recently introduced schematic vortex model, of current progresses in understanding out of equilibrium vortex behaviours. We develop a unified description of ``memory'' phenomena in magnetic and transport properties, such as magnetisation loops and their ``anomalous'' 2nd peak, logarithmic creep, ``anomalous'' finite creep rate in the limit of vanishing temperature, ``memory'' and ``irreversibility'' in I-V characteristics, time dependent critical currents, ``rejuvenation'' and ``aging'' of the system response.Comment: updated versio