Responses of seed germination, seedling growth under salinity stresses and variability for phenotypic traits in Tossa Jute (Corchorus olitorius L.)

Salinity is a serious abiotic stress to Jute and other crop cultivation at saline regions in the world. No salt tolerant Tossa Jute (Corchorus olitorius L.) variety was developed in Bangladesh. Hence, six Tossa Jute accessions were investigated at germination stage against six concentration levels (0.00 or d.H2O, 8.0, 10.0, 12.0, 14.0 and 16.0 dS m-1) of salt (NaCl) using RCB design at Bangladesh Jute Research Institute (BJRI) during March-July, 2020. Jute seeds collected from Gene Bank of BJRI were allowed to germinate under laboratory condition. Seed germination rate was adversely affected as well as delay in germination was prolonged with increasing the salt concentration. In control, seeds were germinated up to 14.0 dS m-1 salt solution. Among six genotypes, Acc. 1141 and Acc. 3801 showed the highest germination rate (86.67 %); Acc. 3801 gave maximum root length (17.0 mm), dry biomass (6.37 mg); and Acc. 1089 showed higher shoot length (10.0 mm), fresh weight (43.93 mg) and salt tolerance index (60.69 %) under 14.0 dS m-1 level. Higher relative salt harm rate (7.14 %) was observed in both Acc. 1141 and Acc. 3801 under 14.0 dS m-1 salinity indicating highly tolerance to salinity. Acc. 3801 and Acc. 1141 were found good for germination under salt stresses; Acc. 3801, Acc. 1089 for fiber yield and salt tolerance; Acc. 3801 and Acc. 1407 for higher fiber yield. Acc. 3801 was found good for salt tolerance and fiber yield content. The genotypes with good desirable characters would be used as breeding materials to develop high yielding salt tolerant Tossa Jute variety

Appraisal of resistant genotypes against brinjal shoot and fruit borer (BSFB), Leucinodes orbonalis, Guenee

The main purpose of this study was to find out the best variety of brinjal having resistance to BSFB. A pot experiment was carried out at the germplasm centre, Agrotechnology Discipline, Khulna University, Khulna during February 2014 to August 2014. The experiment was laid out in CRD using thirteen varieties with five replications. The varieties were V1=BARI begun-1, V2=BARI begun-4, V3=BARI begun-5, V4=BARI begun-6, V5=BARI begun-7, V6=BARI begun-8, V7=BARI begun-9, V8=BARI begun-10, V9=Makra, V10=Muktokashi, V11=Lalita, V12=Hazra, V13=Chaga. Data were collected on total number of shoot, total number of infested shoot, percentage of shoot damage, percentage of shoot infestation reduction, numbers of larvae per infested shoot, total number of fruit, percentage of fruit damage, percentage of fruit infestation reduction, numbers of larvae per infested fruit. Results have shown that the minimum shoot infestation was found in BARI begun-6 (29.60%, 32.40%, 29.86% and 29.38%, respectively at four different stages of eggplant). Percent of fruit infestation was minimum in V4 (BARI begun-6) (25.16%, 27.42% and 25.40% at three stages respectively)

Responses and screening of white jute (Corchorus capsularis L.) genotypes against salinity stresses

Soil salinity, a serious threat to jute cultivation in saline areas (southern parts) of Bangladesh. Bangladesh Jute Research Institute (BJRI) has developed a moderately salt tolerant White Jute variety (BJRI Deshi pat-8; BJC 2197) in 2013 which can’t grow well in saline areas having more than 8.0 dSm-1 salinity stress. Hence, 23 whitejute accessions and one control variety (BJC 2197) were tested to isolate the salt tolerant accession(s) for hybridization purpose followed by augmented design in farmers’ field having nearly 8.0-9.0 dSm-1 salinity at Patuakhali district during mid-March to mid-August 2019. The experimental plot size was 3.0 m2 (3 m × 1 m) for each genotype having 3 lines of 1.0 m length, plant-plant: 10-15 cm and line- line: 30 cm distance. Soil salinity was recorded during sowing, vegetative and plant maturity stages. In this study, the highest plant height 2.84 m was recorded in Acc. 2750 followed by Acc. 2589 (2.76 m) and Acc. 1779 (2.69 m). The highest fiber yield (9.0 g plant-1) was observed in Acc. 1779 followed by Acc. 2589 (8.40 g plant-1) and Acc. 2750 (8.0 g plant-1). The lowest plant mortality rate (2.5%) was found in Acc.2750 followed by Acc.1779 (6.24%), Acc. 1780 (7.50), Acc. 3556 (11.10%), Acc. 2589 (11.20%) and BJC 2197 (16.5%). Few seeds were germinated in Acc. 3020 and Acc. 3658 but plants were died after 20 days of sowing. Six genotypes of cluster I showed higher diversity in Euclidean cluster analysis. The Acc. 2750, Acc. 1779, Acc. 2589 of cluster I having relative salinity tolerance and good fiber yield capacity would be grown in next year for confirmation as well as hybridization with the existing salinity susceptible variety to develop high yielding white jute variety for saline areas

Analyses of variability, euclidean clustering and principal components for genetic diversity of eight Tossa Jute (Corchorus olitorius L.) genotypes

An investigation was done to assess the genetic variability, character associations, and genetic diversity of eight jute genotypes for seven morphological traits in a randomised complete block design at Bangladesh Jute Research Institute during 15 March, 2018 to 31 December, 2019. Analyses results revealed significant differences (P<0.01) among all genotypes for studied traits indicating the presence of variability. All the lines performed better than one control (JRO-524), and the line (O-0412-9-4) provided good results for desired traits than all controls. Jute fibre yield showed the highest broad sense heritability (98.54%). The studied jute morphological traits i.e. Plant population, the plant height, green weight, dry fibre yield and dry stick yield gave high heritability along with high genotypic and phenotypic variances, genetic advances in percent of the mean, highly significant and positive correlations. It indicates the possibility of crop improvement through phenotypic selection and maximum genetic gain, simultaneously at the genotypic-phenotypic level. Clustering analysis grouped all genotypes into three distinct clusters. The cluster II showed the highest mean values for all traits followed by cluster I and III. The first two principal components with higher Eigen values (>1.0) accounted for 90.88% of the total variation in the principal component analysis. PCA and cluster analyses indicated that the advanced breeding line O-0412-9-4 made its individual cluster II with higher inter-cluster distance and higher fibre yield (3.12 t ha-1). The investigation was done to select the genotype(s) with good fibre yield and distinct features in respect of developing high yielding Tossa jute variety for cultivation in the farmers’ field. This genotype O-0412-9-4 was selected based on higher plant height, base diameter, fibre yield content. It will be developed as a high yielding variety considering its’ higher genetic variability, heritability, genetic advance, significant associations for desirable characters

Mediating role of arsenic in the relationship between diet and pregnancy outcomes: prospective birth cohort in Bangladesh

BackgroundEpidemiological evidence suggests that arsenic (As) exposure during pregnancy may reduce infant birth weight. One significant source of As exposure is diet; thus, As may indirectly affect infant growth by mediating the effect of maternal diet on birth weight (BW). This study evaluated the potential mediating effect of As in the relationship between maternal diet and BW, gestational age (GA), and gestational weight gain (GWG).MethodThe study used a prospective birth cohort in Bangladesh that captured the dietary habits of 1057 pregnant women through validated semi-quantitative food frequency questionnaires. We applied a causal mediation model with counterfactual approach and performed analyses with and without adjustment for total energy intake. Other potential confounders captured by self-report questionnaire were exposure to secondhand tobacco smoke, betel nut chewing, maternal age, education level, household income level, physical activity level during pregnancy, and daily hours spent cooking over open fire.ResultNo association was found between maternal toenail As and BW. Higher absolute and energy-adjusted protein, fat and fiber intakes were associated with higher toenail As and lower GA and GWG, while higher absolute and energy-adjusted carbohydrate intake was associated with lower toenail As and greater GA and GWG. Mediation analysis showed significant natural indirect effects by toenail As in the relationships between absolute fat, carbohydrate and fiber intake with GA. Specifically, 3% (95% CI: 1-6%) of the association between carbohydrate intake and GA was mediated by change in toenail As, 6% (95% CI: 1-9%) for absolute fat intake and 10% (95% CI: 4-13%) for absolute fiber intake. After adjusting for total energy, no significant mediating effect was observed, suggesting the mediating effect might be due to measurement error or that absolute amount of As exposure rather than the amount in relationship to total energy intake was a more important factor to consider when understanding the negative implication of As on fetal growth.ConclusionThe mediating effect of As in the relationship between maternal diet and birth outcome was small and might be due to measurement error

Arsenic is associated with reduced effect of folic acid in myelomeningocele prevention: a case control study in Bangladesh

Background: Arsenic induces neural tube defects in several animal models, but its potential to cause neural tube defects in humans is unknown. Our objective was to investigate the associations between maternal arsenic exposure, periconceptional folic acid supplementation, and risk of posterior neural tube defect (myelomeningocele) among a highly exposed population in rural Bangladesh. Methods: We performed a case–control study that recruited physician-confirmed cases from community health clinics served by Dhaka Community Hospital in Bangladesh, as well as local health facilities that treat children with myelomeningocele. Controls were selected from pregnancy registries in the same areas. Maternal arsenic exposure was estimated from drinking water samples taken from wells used during the first trimester of pregnancy. Periconceptional folic acid use was ascertained by self-report, and maternal folate status was further assessed by plasma folate levels measured at the time of the study visit. Results: Fifty-seven cases of myelomeningocele were identified along with 55 controls. A significant interaction was observed between drinking water inorganic arsenic and periconceptional folic acid use. As drinking water inorganic arsenic concentrations increased from 1 to 25 μg/L, the estimated protective effect of folic acid use declined (OR 0.22 to 1.03), and was not protective at higher concentrations of arsenic. No main effect of arsenic exposure on myelomeningocele risk was identified. Conclusions: Our study found a significant interaction between drinking water inorganic arsenic concentration from wells used during the first trimester of pregnancy and reported intake of periconceptional folic acid supplements. Results suggest that environmental arsenic exposure reduces the effectiveness of folic acid supplementation in preventing myelomeningocele

CLIP and cohibin separate rDNA from nucleolar proteins destined for degradation by nucleophagy

Nutrient starvation or inactivation of target of rapamycin complex 1 (TORC1) in budding yeast induces nucleophagy, a selective autophagy process that preferentially degrades nucleolar components. DNA, including ribosomal DNA (rDNA), is not degraded by nucleophagy, even though rDNA is embedded in the nucleolus. Here, we show that TORC1 inactivation promotes relocalization of nucleolar proteins and rDNA to different sites. Nucleolar proteins move to sites proximal to the nuclear-vacuolar junction (NVJ), where micronucleophagy (or piecemeal microautophagy of the nucleus) occurs, whereas rDNA dissociates from nucleolar proteins and moves to sites distal to NVJs. CLIP and cohibin, which tether rDNA to the inner nuclear membrane, were required for repositioning of nucleolar proteins and rDNA, as well as effective nucleophagic degradation of the nucleolar proteins. Furthermore, micronucleophagy itself was necessary for the repositioning of rDNA and nucleolar proteins. However, rDNA escaped from nucleophagic degradation in CLIP- or cohibin-deficient cells. This study reveals that rDNA-nucleolar protein separation is important for the nucleophagic degradation of nucleolar proteins

Contaminated Turmeric Is a Potential Source of Lead Exposure for Children in Rural Bangladesh

Background. During the conduct of a cohort study intended to study the associations between mixed metal exposures and child health outcomes, we found that 78% of 309 children aged 20–40 months evaluated in the Munshiganj District of Bangladesh had blood lead concentrations ≥5 µg/dL and 27% had concentrations ≥10 µg/dL. Hypothesis. Environmental sources such as spices (e.g., turmeric, which has already faced recalls in Bangladesh due to high lead levels) may be a potential route of lead exposure. Methods. We conducted visits to the homes of 28 children randomly selected from among high and low blood lead concentration groups. During the visits, we administered a structured questionnaire and obtained soil, dust, rice, and spice samples. We obtained water samples from community water sources, as well as environmental samples from neighborhood businesses. Results. Lead concentrations in many turmeric samples were elevated, with lead concentrations as high as 483 ppm. Analyses showed high bioaccessibility of lead. Conclusions. Contamination of turmeric powder is a potentially important source of lead exposure in this population

Neurodevelopmental outcomes among 2- to 3-year-old children in Bangladesh with elevated blood lead and exposure to arsenic and manganese in drinking water

Background: The people of Bangladesh are currently exposed to high concentrations of arsenic and manganese in drinking water, as well as elevated lead in many regions. The objective of this study was to investigate associations between environmental exposure to these contaminants and neurodevelopmental outcomes among Bangladeshi children. Methods: We evaluated data from 524 children, members of an ongoing prospective birth cohort established to study the effects of prenatal and early childhood arsenic exposure in the Sirajdikhan and Pabna Districts of Bangladesh. Water was collected from the family’s primary drinking source during the first trimester of pregnancy and at ages 1, 12 and 20–40 months. At age 20–40 months, blood lead was measured and neurodevelopmental outcomes were assessed using a translated, culturally-adapted version of the Bayley Scales of Infant and Toddler Development, Third Edition (BSID-III). Results: Median blood lead concentrations were higher in Sirajdikhan than Pabna (7.6 vs. <LODμg/dL, p <0.0001) and water arsenic concentrations were lower (1.5 vs 25.7 μg/L, p <0.0001). Increased blood lead was associated with decreased cognitive scores in Sirajdikhan (β = −0.17, SE = 0.09, p = 0.05), whereas increased water arsenic was associated with decreased cognitive scores in Pabna (β = −0.06, SE = 0.03, p = 0.05). Water manganese was associated with fine motor scores in an inverse-U relationship in Pabna. Conclusion: Where blood lead levels are high, lead is associated with decreased cognitive scores on the BSID-III, and effects of other metals are not detected. In the setting of lower lead levels, the adverse effects of arsenic and manganese on neurodevelopment are observed. Electronic supplementary material The online version of this article (doi:10.1186/s12940-016-0127-y) contains supplementary material, which is available to authorized users

Stunting and lead: using causal mediation analysis to better understand how environmental lead exposure affects cognitive outcomes in children

Background Many children in Bangladesh experience poor nutritional status and environmental lead exposure, both of which are associated with lower scores on neurodevelopmental assessments. Recent studies have suggested that part of lead’s adverse effects on neurodevelopment are caused in part by lead’s effect on growth. New statistical methods are now available to evaluate potential causal pathways in observational studies. This study used a novel statistical method to test the hypothesis that stunting, a measure of linear growth related to poor nutrition, is a mediator and/or an effect modifier of the lead exposure’s adverse effect on cognitive development. Methods Participants were 734 children from a longitudinal birth cohort established in rural Bangladesh to study the health effects of prenatal and early childhood environmental metal exposures. Lead exposure was estimated using umbilical cord blood samples obtained at birth and blood obtained via venipuncture at age 20–40 months. Stunting was determined using the World Health Organization’s standards. Neurodevelopment was assessed at age 20–40 months years using the Bayley Scales of Infant and Toddler Development, Third Edition (BSID-III). We evaluated the effect of lead on stunting and whether the effect of lead on cognitive scores is modified by stunting status in multivariable regression analyses. We then conducted a novel 4-way mediation analysis that allows for exposure-mediator interaction to assess how much of the effect of lead on cognitive scores is explained by the pathway through stunting (mediation) and how much is explained by the interaction between lead and stunt (effect modification). Results Stunting was not a mediator of the effect of lead in our analyses. Results suggested effect modification by stunting. In an area of Bangladesh with lower lead exposures (median umbilical cord blood lead concentration, 1.7 μg/dL), stunting modified the relationship between prenatal blood lead concentrations and cognitive score at age 2–3 years. A 1-unit increase in natural log cord blood lead concentration in the presence of stunting was associated with a 2.1-unit decrease in cognitive scores (β = − 2.10, SE = 0.71, P = 0.003). This interaction was not found in a second study site where lead exposures were higher (median umbilical cord blood lead concentration, 6.1 μg/dL, β = − 0.45, SE = 0.49, P = 0.360). Conclusions We used a novel method of mediation analysis to test whether stunting mediated the adverse effect of prenatal lead exposure on cognitive outcomes in Bangladesh. While we did not find that stunting acted as mediator of lead’s effect on cognitive development, we found significant effect modification by stunting. Our results suggest that children with stunting are more vulnerable to the adverse effects of low-level lead exposure