10 research outputs found

    The integrated stress response regulates BMP signalling through effects on translation.

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    BACKGROUND: Developmental pathways must be responsive to the environment. Phosphorylation of eIF2α enables a family of stress-sensing kinases to trigger the integrated stress response (ISR), which has pro-survival and developmental consequences. Bone morphogenetic proteins (BMPs) regulate multiple developmental processes in organisms from insects to mammals. RESULTS: Here we show in Drosophila that GCN2 antagonises BMP signalling through direct effects on translation and indirectly via the transcription factor crc (dATF4). Expression of a constitutively active GCN2 or loss of the eIF2α phosphatase dPPP1R15 impairs developmental BMP signalling in flies. In cells, inhibition of translation by GCN2 blocks downstream BMP signalling. Moreover, loss of d4E-BP, a target of crc, augments BMP signalling in vitro and rescues tissue development in vivo. CONCLUSION: These results identify a novel mechanism by which the ISR modulates BMP signalling during development

    Combining long-term circuit mapping and network transcriptomics with SiR-N2c

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    An exciting frontier in circuit neuroscience lies at the intersection between neural network mapping and single-cell genomics. Monosynaptic rabies viruses provide a promising platform for the merger of circuit mapping methods with -omics approaches. However, three key limitations have hindered the extraction of physiologically meaningful gene expression profiles from rabies-mapped circuits: inherent viral cytotoxicity, high viral immunogenicity and virus-induced alteration of cellular transcriptional regulation. These factors alter the transcriptional and translational profiles of infected neurons and their neighboring cells. To overcome these limitations we applied a self-inactivating genomic modification to the less immunogenic rabies strain, CVS-N2c, to generate a self-inactivating CVS-N2c rabies virus (SiR-N2c). SiR-N2c not only eliminates undesired cytotoxic effects but also substantially reduces gene expression alterations in infected neurons and dampens the recruitment of innate and acquired immune responses, thus enabling open-ended interventions on neural networks and their genetic characterization using single-cell genomic approaches

    Additional file 1: of The integrated stress response regulates BMP signalling through effects on translation

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    Figure S1. Modulation of the ISR delays developmental delay and causes wing venation defects. (A) Phenotypes of animals expressing ppp1r15 RNAi under the control of a panel of tissue-selective drivers. (B) Representative photomicrographs (5× objective) of w 1118 ;esgGAL4 (esg) and esgGAL4 > UAS-ppp1r15 RNAi (esg > ppp1r15 RNAi) animals at 5 and 14 days after egg laying (AEL). Scale bar = 1 mm. (C) Representative photomicrographs of w1118;esgGAL4 (esg), esgGAL4 > UAS-ppp1r15 RNAi (esg > ppp1r15 RNAi), esgGAL4 > UAS-gcn2 RNAi (esg > gcn2 RNAi) and esgGAL4 > UAS-gcn2;UAS-ppp1r15 RNAi (esg > ppp1r15 RNAi;gcn2 RNAi) animals at 14 days AEL. (D) Quantification of indicated crosses at days 5 and 14 AEL. esgGAL4 > UAS-ppp1r15 RNAi (esg > ppp1r15 RNAi), esgGAL4 > UAS-dGCN2 RNAi (esg > gcn2 RNAi) and esgGAL4 > UAS-dPERK RNAi (esg > perk RNAi). n denotes number of animals counted. P values calculated using Χ2 statistic with Bonferroni correction for multiple comparisons. (E) Quantification of indicated crosses at days 5 and 14 AEL. enGAL4 > UAS-ppp1r15 RNAi (en > ppp1r15 RNAi), enGAL4 > UAS-gcn2 RNAi (en > gcn2 RNAi) and enGAL4 > UAS-perk RNAi (en > perk RNAi). n denotes number of animals counted. P values calculated using Χ 2 statistics with Bonferroni correction for multiple comparisons. (F) Representative photomicrographs of adult wings of the indicated genotypes. Scale bars = 250 μm. (PDF 1057 kb

    Additional file 4: of The integrated stress response regulates BMP signalling through effects on translation

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    Tables S1–S15. Analysis of transcriptional data. Table S1. mRNAs induced in S2 cells expressing HA-crc for 3 h. Table S2. mRNAs induced in S2 cells expressing HA-crc for 6 h. Table S3. mRNAs repressed in S2 cells expressing HA-crc for 3 h. Table S4. mRNAs repressed in S2 cells expressing HA-crc for 6 h. Table S5. Gene Ontology (GO) term enrichment of mRNAs induced in S2 cells expressing HA-crc for 3 h. Table S6. GO term enrichment of mRNAs induced in S2 cells expressing HA-crc for 6 h. Table S7. GO term enrichment of mRNAs repressed in S2 cells expressing HA-crc for 3 h. Table S8. GO term enrichment of mRNAs repressed in S2 cells expressing HA-crc for 6 h. Table S9. mRNAs induced in S2 cells expressing dGCN2-CA-V5 for 6 h. Table S10. mRNAs induced in S2 cells expressing dGCN2-CA-V5 for 12 h. Table S11. mRNAs repressed in S2 cells expressing dGCN2-CA-V5 for 12 h. Table S12. mRNAs repressed in S2 cells expressing dGCN2-CA-V5 for 12 h. Table S13. GO term enrichment of mRNAs induced in S2 cells expressing dGCN2-CA-V5 for 6 h. Table S14. GO term enrichment of mRNAs induced in S2 cells expressing dGCN2-CA-V5 for 12 h. Table S15. GO term enrichment of mRNAs repressed in S2 cells expressing dGCN2-CA-V5 for 12 h. (XLSX 284 kb

    Additional file 2: of The integrated stress response regulates BMP signalling through effects on translation

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    Figure S2. crc is Drosophila ATF4. (A) HA-crc-expressing S2 lysates and matched samples incubated with λ phosphatase (λ ppase) were subjected to SDS-PAGE and transferred to nitrocellulose. Immunoblotting was performed using an anti-HA antibody. (B) The 5’UTR of crc transcript E: small upstream open reading frames (uORFs) in orange; coding sequence in red. (C) Luminescence signal of luciferase control (blue bars) or 5’UTR-crcE-luciferase reporter (red bars) expressed in HEK293T cells presented as the ratio of firefly/Renilla luminescence fold change compared to vehicle-treated samples. Cells were treated with the indicated concentrations of ISRIB and/or tunicamycin for 16 h. Mean ± standard error of the mean (SEM). n = 3. P value calculated using ANOVA with Bonferroni post hoc testing. (D) Representative photomicrographs of adult eyes. Gmr (gmrGAL4 driver control), gmr > perk (gmrGAL4 > UAS-perk), gmr > crc RNAi (gmrGAL4 > UAS-crc RNAi) and gmr > perk;crc RNAi (gmrGAL4 > UAS-crc RNAi;UAS-perk). Scale bar = 200 μm. (E) Representative photomicrographs (5× objective) of adult wings of the indicated genotypes. en (enGAL4 driver control), en > dicer2;ppp1r15 RNAi (enGAL4 > UAS-dicer2;UAS-ppp1r15 RNAi), en > dicer2;crc RNAi (enGAL4 > UAS-dicer2;UAS-crc RNAi) and en > dicer2;crc RNAi;ppp1r15 RNAi (enGAL4 > UAS-dicer2;UAS-crc RNAi;UAS-ppp1r15 RNAi). Lower panels are enlargements of the crossvein territories. Scale bars = 250 μm. (F) Quantification of ACV phenotype in (E). (G) Representative photomicrographs of adult wings of the indicated genotypes. nab (nabGAL4 driver control), nab > ppp1r15 RNAi (nabGAL4 > UAS-ppp1r15 RNAi), nab > crc RNAi (nabGAL4 > UAS-crc RNAi) and nab > ppp1r15 RNAi;crc RNAi (nabGAL4 > UAS-crc RNAi;UAS-ppp1r15 RNAi). Lower panels are enlargements of the crossvein territories. Scale bars = 250 μm. (H) In situ hybridisation of w1118 wing imaginal disc with sense or antisense probes to residues 1405–1900 of crc transcript A. (I) Representative photomicrographs of adult wings of the indicated genotypes. nab (nabGAL4 driver control), nab > crc (nabGAL4 > UAS-crcA). Lower panels are enlargements of the crossvein territories. Scale bar = 250 μm. (PDF 3370 kb
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