49 research outputs found
PEPCK pos3-intron *BEAST tree file
The nuclear PEPCK *BEAST output tree for codon position 3 and intro
species tree *BEAST output file
The *BEAST output species tree including the five genes (cox1 + 16S + PEPCK + EF-1α + wg
nuclear MrBayes tree file
The concatenated nuclear (PEPCK + EF-1α + wg) MrBayes output tre
AFLP data of 4 stream insects and environment data in Japan
AFLP data of 4 stream insects and environment data in Japa
Clock-constrained Bayesian maximum clade credibility tree of the complete <i>cox1</i> data set obtained using BEAST.
<p>The tree (upper panel), obtained under a relaxed lognormal molecular
clock, is presented with its corresponding lineage-through-time plot
(lower panel). The broken vertical line indicates the point of maximum
likelihood fit of the single-threshold GMYC model, i.e. the point of
transition from interspecies (Yule) to intraspecies (coalescent)
branching events. The grey shading corresponds to the confidence
interval of the transition point. The bars indicate significant clusters
(arrows: significant singletons) that are inferred to be species. The
five species groups are specified on subtending branches. All GMYC
clusters were well supported (PP≥0.99).</p