Bayesian phylogenetic trees of New Zealand Broscini.

<p>Bayesian trees of a subset of Broscini samples to confirm ingroup and outgroup relationship; A) COI phylogney (10 million generation, run four times, burn in 10%), three taxa outside New Zealand Broscini (<i>Bountya insularis</i>, <i>Chylnus ater</i>, <i>Calathus aztec</i>) were chosen as outgroup (not shown); B) 18S phylogeny (10 million generation, run four times, burn in 10%), three taxa outside New Zealand Broscini (<i>Broscosoma relictum</i>, <i>Promecoderus</i> sp., <i>Creobius eydouxi</i>) comprised the outgroup (not shown).</p

List of investigated Broscini samples with sample numbers corresponding to numbers in Figures, including species name, genes sequenced per specimen and sampling locations.

<p>(<i>M.</i> = <i>Mecodema</i>; <i>Meta</i> = <i>Metaglymma</i>; <i>O.</i> = <i>Oregus</i>; <i>D.</i> = <i>Diglymma</i>; S.I. = South Island New Zealand; N.I. = North Island New Zealand; BOP = Bay of Plenty; genes analysed: a = COI, COII, 16S, 18S; b = COI, COII, 16S; c = COI, 18S; d = COI; LUNZ = Lincoln University Entomological Research Museum; P = S.M. Pawson collection);</p><p>COI sequences from samples of the <i>Mecodema</i> ingroup marked with * have previously been deposited in Genbank (#JN409817–JN409904) <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone.0086185-Goldberg2" target="_blank">[18]</a>.</p

Maximum likelihood phylogeny for <i>Mecodema</i>.

<p>A) Spatial distribution of samples used in this analysis. Symbols correspond to those in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone-0086185-g002" target="_blank">Fig. 2B</a> and code for different clades. B) Analysis of concatenated dataset including mitochondrial COI, COII and 16S plus nuclear 18S. Values at nodes indicate ML bootstrap support returned by analysis using RaxML. Specimen numbers at tips are given as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone-0086185-t002" target="_blank">Table 2</a>.</p

The timing of <i>Mecodema</i> diversification.

<p>A) COI Bayesian tree generated in BEAST. Numbers on nodes show age estimates based on stratigraphic calibration of 4 Myr. Outgroup taxa were the same as used in the outgroup test (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone-0086185-g001" target="_blank">Fig. 1</a>). Grey branches indicate lineages present in North Island New Zealand, and black branches indicate South Island lineages. Tip symbols correspond to clade and location identifiers in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone-0086185-g002" target="_blank">Fig. 2</a>. Coloured symbols match symbols in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone-0086185-g003" target="_blank">Fig. 3B</a>, highlighting disjunct lineages in southern North Island and northern South Island. Asterisks indicate age estimates between N.I. and S.I. lineages (* = 1.60 Myr, ** = 1.69 Myr, *** = 2.03 Myr). B) Reconstruction of the paleogeographic environment in lower North Island, New Zealand ca. 3 million years ago, green areas indicating likely land above sea level during this time (modified from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone.0086185-Trewick5" target="_blank">[28]</a>). Black outlines indicate present day New Zealand land area with coloured symbols corresponding to those in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone-0086185-g003" target="_blank">Fig. 3A</a>, showing the present sampling locations of some sister taxa in North Island and South Island. (Scale bar = 100 km.)</p

ML Tree Indicating Evolutionary Relationships for <i>Nothofagus</i> Species Based on the <i>atpB–psaI</i> and <i>trnL–trnF</i> Region of the Chloroplast Genome (7,269 bp)

<p>Divergence dates (in Myr) were obtained with an F84+ Γ₈ substitution model using the BRMC approach of Thorne et al. [<a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0030014#pbio-0030014-b29" target="_blank">29</a>]. For the dates indicated, the age of the root node and that of F/N1 were constrained to 70–80 Myr; L2 was also constrained in accordance with fossil data [<a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0030014#pbio-0030014-b26" target="_blank">26</a>] at 20 Myr. Violet numbers show bootstrap values. The pollen grains represent the first appearance of the respective pollen type in the New Zealand fossil record. Plio, Pliocene; Oligo, Oligocene; Palaeo, Palaeocene; Ma, Maastrichian; Campan, Campanian. L1–L4, <i>Lophozonia</i> 1–4; F1–F2, <i>Fuscospora</i> 1–2; F/N1, <i>Fuscospora</i>/<i>Nothofagus</i> 1.</p

List of Broscini species used in this study with information regarding authority, distribution (S.I. = South Island New Zealand, N.I. = North Island New Zealand; Ch.Is. = Chatham Islands) and number of individuals employed.

<p>List of Broscini species used in this study with information regarding authority, distribution (S.I. = South Island New Zealand, N.I. = North Island New Zealand; Ch.Is. = Chatham Islands) and number of individuals employed.</p

BEAST time estimates based on stratigraphic and COI substitution rate of Coleoptera [44] calibration.

<p>Letters correspond to letters in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086185#pone-0086185-g003" target="_blank">Fig. 3A</a>, bold letters denote NODE (A) and ROOT (G).</p

Fast Na⁺ Ion Conduction in NASICON-Type Na_3.4Sc₂(SiO₄)_0.4(PO₄)_2.6 Observed by ²³Na NMR Relaxometry

The bulk diffusion of Na in Na_3.4Sc₂(SiO₄)_0.4(PO₄)_2.6 was investigated by ²³Na NMR relaxometry in the temperature range from 250 to 670 K. These measurements reveal fast Na diffusion with hopping rates of 3 × 10⁸ s^–1 for the Na⁺ ions at 350 K and activation barriers for single Na⁺ ion jumps of (0.20 ± 0.01) eV. From these values a diffusion coefficient of <i>D</i> = 6.4 × 10^–12 m²/s and a Na ion conductivity of σ_Na = 4 mS/cm (both at 350 K) can be estimated. Measurements on two samples, one stored in air and one stored in Ar, do not show significant differences, which reveals that these NMR measurements are probing the bulk diffusion while conductivity measurements usually are also influenced by grain boundaries that can be affected by the moisture level during storage

Primary Industry Genomics Literature Search 2005-2015

This text file details the final list of publications fitting ISI Web of Science primary industry genomics literature search detailed in Supplement 1 of the publication "Building strong relationships between conservation biology and primary industry leads to mutually-beneficial genomic advances". All final publications included in this literature search are detailed in the following text document by year published, authors, publication title, journal, and (if available) abstract

Conservation Genomics Literature Search 2005-2015

This text file details the final list of publications fitting ISI Web of Science conservation genomics literature search detailed in Supplement 1 of the publication "Building strong relationships between conservation biology and primary industry leads to mutually-beneficial genomic advances". All final publications included in this literature search are detailed in the following text document by authors, year published, publication title, journal, and (if available) abstract