Morphometric raw data (29 characters) of di- and tetraploid Arabidopsis arenosa and A. lyrata ssp. petraea from Eastern Austria and the Western Carpathians

In the first column the individuals are listed. Their unique identification numbers comprise a population number first and an individual number second. In rare cases a third number is found between these two, which further characterizes the population and refers to our internal unique identifier system. Taxonomic assignment of the populations is as follows: diploid Arabidopsis arenosa (915140-915141), tetraploid A. arenosa (Ex04-93), diploid A. lyrata ssp. petraea (87-74), tetraploid A. lyrata ssp. petraea (01-95). In columns 2-24 morphological characters are listed. The character abbreviations 1-29 are as follows: Number of upper stem leaves above the midpoint of the stem (1), plant height (2), number of flowers (3), number of stem leaves (4), length of leafy stem part (5), length of second stem leaf (6), width of second stem leaf (7), length of uppermost stem leaf (8), width of uppermost stem leaf (9), length of biggest rosette leaf (10), length of biggest rosette leaf from the first leaf tooth to the leaf tip (11), basic number of leaf teeth of the biggest rosette leaf (12), length of stem from the ground rosette to the biggest stem leaf (13), length of stem from the ground rosette to the smallest stem leaf (14), hairs on leafy stem part (15), hairs on stem from the ground rosette to the first leaf (16), simple hairs on stem from the ground rosette to the first leaf (17), bifurcated hairs on stem from the ground rosette to the first leaf (18), trifurcated hairs on stem from the ground rosette to the first leaf (19), hairs on leafless stem part (20), simple hairs on flower buds (21), bifurcated hairs on flower buds (22), trifurcated hairs on flower buds (23), simple hairs on second stem leaf (24), bifurcated hairs on second stem leaf (25), trifurcated hairs on second stem leaf (26), white petal colour (27), light pink petal colour (28), dark pink petal colour (29). Eleven characters are used as ratios, e.g., 2:5. Characters 1-14 are either discrete or continuous quantitative characters. Characters 15-29 are qualitative characters

cpDNA haplotype plotted on statistical parsimony network based on 149 ITS types.

<p>Roman numbers (I, II, III, V) indicate the lineage of the cpDNA types associated with accessions sharing the ITS type in question: cpDNA lineages are numbered according to <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0036491#pone.0036491-Dobe1" target="_blank">[7]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0036491#pone.0036491-Kiefer2" target="_blank">[8]</a>; S8 =  ancestral suprahaplotype from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0036491#pone.0036491-Kiefer2" target="_blank">[8]</a>; ?  =  no cpDNA data available. It can be concluded that cpDNA lineages and ITS lineages are not congruent in most cases. However, some ITS sequence groups are dominated by a particular cpDNA lineage.</p

Geographical distribution of accessions plotted on statistical parsimony network based on 149 ITS types.

<p>Accessions were sorted into geographical groups (see colour legend of Figure) and distribution of accessions sharing an ITS type over geographical regions was calculated and is displayed as pie charts. There is a trend for ITS type lineages to occur more in particular geographical regions than in others indicating (at least past) gene flow throughout that region.</p

Summary of taxa included and conclusions drawn.

<p>Information summarized in numbers; for details see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0036491#pone.0036491.s008" target="_blank">Table S8</a>.</p

Microsatellite raw data (seven markers) of di- and tetraploid Arabidopsis arenosa and A. lyrata ssp. petraea from Eastern Austria and the Western Carpathians

Data are deposited as BAPS input file. Individuals are listed in the first column. Their unique identification numbers comprise a population number first and an individual number second. In rare cases a third number is found between these two, which further characterizes the population and refers to our internal unique identifier system. POP stands for "population". Taxonomic assignment of the populations is as follows: diploid Arabidopsis arenosa (126-915141), tetraploid A. arenosa (03-81), diploid A. lyrata ssp. petraea (115-74), tetraploid A. lyrata ssp. petraea (01-140). In columns two-eight the microsatellite markers are listed (ATTS0392, SLL2, ICE13, ICE7, NGA162, ICE14, AthZFPG). Each allele of each marker was annotated with a two digit code number

Taxon identity plotted on statistical parsimony network based on 149 ITS types.

<p>Sharing of ITS types by taxa was calculated for every ITS type in the network. Pie Charts indicate percentage of taxa sharing the ITS type in question. It is obvious that some taxa are restricted to portions of the network while others share several of the ancestral ITS types (e.g. <i>Boechera retrofracta</i>).</p

Statistical Parsimony network based on the 24 most frequent ITS types.

<p>The nodes of the network have been replaced by pie diagrams depicting ITS type sharing by different taxa; taxa which occurred only once or twice all over the network are coloured in grey (light gray 1, dark grey 2); the overall frequency of the ITS types is given within the pie charts.</p

Brassicaceae genome size estimates

Species list for genome size estimates of Brassicaceae species

Alignments and partitions

NUCLEOTIDE ALIGNMENT(s) and annotattions/partition

Plant material sources

Sources of plant material and sequence data used for chloroplast genome analysis