How hypoxia affects microbiota metabolism in mice

ObjectiveTo investigate the relationship between gut microbiota and the fecal metabolites of hypoxic environments in mice.MethodsHigh-fat diet-induced obese mice (n = 20) and normal diet-fed mice (n = 20) were randomly divided into four groups: high altitude obese group (HOB), high altitude normal weight group (HN), low altitude obese group LOB (LOB), and low altitude normal weight group (LN). Fecal samples from each group were 16S rRNA gene sequenced, and five samples from each of the four groups above were selected for non-targeted fecal metabolomics analysis using liquid chromatography-mass spectrometry. The relationship between gut microbiota and fecal metabolites was analyzed using SIMCA 14.1, MetaboAnalyst 5.0 and R 4.1.11.Results(A) Body weight was significantly lower in the hypoxic obesity group than in the normoxic obesity group. (B) Differences in α-diversity and β-diversity were found in the fecal gut microbiota of mice of different body weights and altitude, and the diversity of gut microbiota was higher in the normal group than in the obese group; the results of the comparison between the two groups showed that Faecalibaculum, Romboutsia, Lactobacillus, and A2 were associated with obesity; Romboutsia was associated with hypoxia. (C) The metabolic profiles of fecal metabolites differed between groups: gut microbiota were associated with nucleotide and amino acid metabolism in the same body groups, while gut microbiota were associated with lipid and amino acid metabolism in the same oxygen concentration groups.Conclusion(a) Gut microbiota diversity was reduced in obese groups. Romboutsia was the dominant microbiota in the hypoxia group. (b) Gut microbiota were associated with nucleotide and amino acid metabolism in the same body weight groups, while they were associated with lipid and amino acid metabolism in the same altitude groups

An Expression Tree Decoding Strategy for Mathematical Equation Generation

Generating mathematical equations from natural language requires an accurate understanding of the relations among math expressions. Existing approaches can be broadly categorized into token-level and expression-level generation. The former treats equations as a mathematical language, sequentially generating math tokens. Expression-level methods generate each expression one by one. However, each expression represents a solving step, and there naturally exist parallel or dependent relations between these steps, which are ignored by current sequential methods. Therefore, we integrate tree structure into the expression-level generation and advocate an expression tree decoding strategy. To generate a tree with expression as its node, we employ a layer-wise parallel decoding strategy: we decode multiple independent expressions (leaf nodes) in parallel at each layer and repeat parallel decoding layer by layer to sequentially generate these parent node expressions that depend on others. Besides, a bipartite matching algorithm is adopted to align multiple predictions with annotations for each layer. Experiments show our method outperforms other baselines, especially for these equations with complex structures.Comment: Accepted to EMNLP-2023, camera-ready versio