Teasdale et al 2013 data

This data was collected for male tawny dragons (Ctenophorus decresii) in the field (Flinders ranges, South Australia). Details as to how the contrast data and the pattern and colour proportion data was calculated can be found in the paper and the references there in

Manual curation: 500 gene alignments

The alignments for 500 single copy, orthologous, nuclear genes across 21 representatives of the eupulmonates. Orthology was assessed through manual curation and gene tree assessment. Each alignment contains a mask, 'x' denotes regions that were masked out (i.e. remove from further analyses). The alignments contain dummy sequences for missing taxa

Trinity_assemblies

Transcriptome assemblies for 21 eupulmonate species. The transcriptomes were assembled using the program Trinity

Camaenidae_exon_capture_probe_set

This file contains the probes for the Camaenidae exon capture design. These probes target exons from 490 orthologous genes. The probes were designed for use with the Mycroarray Mybaits custom kit which consists of 120 bp RNA probes

Camaenidae alignment

The concatenated alignment of the 2,648 exons which were sequenced from representatives of the family Camaenidae using exon capture. This alignment was used to produce the camaenidae phylogeny presented in the paper

'Agalma equivalent' alignments

The alignments representing a subset of the output of Agalma, run on 21 eupulmonate transcriptomes. This subset is the 635 orthologous clusters identified by the automated pipeline Agalma, which correspond to the 500 nuclear single copy, orthologous genes identified by manual curation. The alignments contain dummy sequences for missing taxa

'Agalma best' alignments

The alignments representing a subset of the output of Agalma, run on 21 eupulmonate transcriptomes. This subset is the 546 orthologous clusters identified by Agalma, where each orthologous cluster was the only one produced from the respective homolog cluster and had sequences for at least 18 taxa. The alignments contain dummy sequences for missing taxa

Manual_curation_500_genes_seperated_into_exons

This file contains the alignments for the 500 manually curated genes seperated out into alignments per exon based on the exon boundaries from the Lottia gigantea genome. These alignments contain the regions which are masked out in the gene alignments but the mask is not presented

BPP3_Analyses_Gehyra_nana

Input and results files for BPP3 analyses run on four different subsets of Gehyra nana taxa, to test for independence of lineages. Analyses were run twice for each subset of lineages. See Table S2 for lineage subset details

Morphological_measurements_Gehyra_nana

Morphological measurements for 12 morphological traits for Gehyra nana and allied taxa