11 research outputs found
Input file for the GPhoCS analysis.
Sequence data for 60 individuals of 6 capuchino species in GPhoCS format
Fst estimates for each locus
Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S. palustris; 6-S. ruficollis
Restriction Site Associated DNA data
Compressed file containing quality-filtered and demultiplexed reads for each individual in the study. Files are identified by species name followed by sample number as shown in Table S1
Stacks output with identified variants in VCF format
Variants identified by Stacks. Assembly parameters M=n=5
Output from Stacks assembly
This folder contains the Stacks output from the RAD assembly (M=n=5). There are four files per sample (72 samples in total) plus three catalog files (291 files in total). Samples are identified by species name followed by collection number as indicated in Table S1
Genotypes in Arlequin format for the randomized dataset
Genotypes in Arlequin format for the randomized datase
Fst estimates for each locus - RANDOMIZED dataset
Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S. palustris; 6-S. ruficollis
Fst estimates for each locus
Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S. palustris; 6-S. ruficollis
Inter-species average PhiST matrix
Inter-species average PhiST matrix displayed in a Neighbor-joining tree built in PHYLIP (Figure 1a