Appendix A. Statistical results from the ‘sympatric vs. allopatric’ tests for local adaption.

Statistical results from the ‘sympatric vs. allopatric’ tests for local adaption

Tallgrass prairie phylogeny and functional traits along a longitudinal gradient

Community phylogeny, functional traits of grassland species, and model building data and code for GLMMs and GLMs which can be used to access grassland biodiversity.  </p

Allele Counts

This file contains an 11 x 387 matrix of the number of samples where a selected allele of the AFLP loci was observed

BAYENV2 Input File - All Markers

Use this file as the 'control loci' input for BayEnv2. This file is analogous to the 'SNPSFILE' described in BayEnv2

AFLP Raw Genotypes

This file contains the AFLP raw genotype scores (1=presence of AFLP band; 0=absence of AFLP band) for each of the 387 AFLP markers scored across 378 big bluestem (Andropogon gerardii) individual plants

BAYENV2 Covariance Matrices

Resulting covariance matrices after removing the 14 top-ranked outliers from the 'control loci' data set. Tabs separate each successive covariance matrix. These matrices result from independent runs of 10^6 iterations

BAYENV2 Input File - Individual AFLP Loci

Allele count data for a single AFLP locus parsed into individual files. Use these 384 AFLP count data as the individual files as analogous to the 'SNPFILE' input data for BayEnv2. Data occur in the same prairie population order that they occur in the covariance matrix and 'bayenv2_aflp_outliersrem.txt' file

BAYENV Output - XTX

Resulting XtX statistic output from BayEnv2 for each of the 384 polymorphic AFLP loci

Site Weather Data

A compilation of daily weather data for various sites close to the eleven prairie collection sites of this study. Data was derived from NCDC Summary of the Day data set. Available for download also at: http://www.ksre.ksu.edu/wdl/Datafiles.ht

Plant Sample Sizes Per AFLP Locus

This file contains an 11 x 387 matrix of the number of individual plants available for each of the 387 AFLP loci