new_sift_results_all

Results of SIFT analyses identifying deleterious non-synonymous mutations. First column identifies the non-synonymous AA changes and their positions (e.g. S11T). Column 2-6 are the SIFT statistics. Last column are the name of the genes

IlluminaContaminants

List of possible Illumina adaptor contaminants used in read trimming

table_S1_24_02_15

Table S1 with information about samples (location, sequencing stats, etc.

snp_table_deserticola

List of SNPs for H.deserticola. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individua

coverage_per_gene_individuals

Coverage (Number of reads aligned) per individuals and per gene

HA412_trinity_noAltSplice_400bpmin.fa

Link to reference transcriptome described in Renaut et al. 2013 (NatCom), used for all alignments, and previously deposited in Dryad as part of http://dx.doi.org/10.5061/dryad.9q1n4

unique_orf

Unique (longest) open reading frames identified in the reference transcriptom

snp_table_all3

Genotypes and positions of all SNPs identified in the dataset

snp_table_anomalus

List of SNPs for H.anomalus. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individua

new_snp_table_effect

List of all SNPs. Column 4-43 indicate whether this SNP was noncoding (nc), non-synonymous (ns), synonymous (s), alternate stop codon (STOP), or homozygous reference allele (0). Column 44 indicates whether this mutation was analyzed by PROVEAN. Column 45 indicates PROVEAN score, if applicable. Column 46-50 indicate frequency of alternate allele in different classes of individuals