Fig2C_ITS_4cpdna

NEXUS and tre files with the analysis settings used in MrBayes inferred from the combined nuclear and chloroplast dataset (ITS, psbJ-petA, trnL-trnF, petB-petD, trnS-trnG) for Platycodonea

Figure S2

Nexus and .tre files for the single-gene analyses of the Canarina datase

Figure S1

Nexus and .tre files for the single-gene analyses of the Platycodoneae dataset

Fig2B_ITS_platycodoneae

NEXUS and tre files with the analysis settings used in MrBayes inferred from the nuclear ribosomal dataset (ITS) for Platycodonea

Nested-dating approach analysis

Script (.xml) and tre files for the "Nested analyses" of all three linked datasets: Platycodoneae, C. eminii and C. canariensi

Fig2A_cpDNA_Platycodoneae

NEXUS and tre files with the analysis settings used in MrBayes inferred from the concatenated chloroplast dataset (psbJ-petA, trnL-trnF, petB-petD) for the Platycodonea

MrBayes_configAndResults

Nexus datafile (alignment), MrBayes commands, and resulting parameter and tree log files

alignments_andTrees_v5

Nexus files (alignments) for each locus, with their corresponding maximum likelihood tree

add_node_numbers_to_tree

Python script to print a version of an input phylogeny with the nodes annotated with their node number. (So that, e.g., the nodes can be matched to their divergence time estimates, etc.

append_metadata_tofasta_forSequin

A python script that goes through a single-locus alignment and matches each taxon in that alignment with the corresponding metadata, which it adds in a Sequin block to the alignment file. For automating the production of Sequin submission to GenBank in cases where there are many loci, each with different combinations of taxa