5 research outputs found
Genetic data (gene haplotypes and microsatellite genotypes) and geographic sampling locations for each isolate
Genetic data (gene haplotypes and microsatellite genotypes) and geographic sampling locations for the 108 Plasmopara viticola isolates.
Column description:
Isolate_ID: unique isolate identifier
Lat: latitude in decimal degrees
Long: longitude in decimal degrees
Wine_region: region of origin
Trait_data: indicates whether quantitative traits were recorded for this isolate (see the « PV_trait_data.txt » file)
Fungicide_category: resistance to CAA and QoI fungicides
cytb_hap: cytochrome b haplotype. Names follow Chen et al. 2007
CesA3_short_hap1 & 2: CesA3 (short fragment) haplotypes
CesA3_long_hap1 & 2: CesA3 (long fragment) haplotypes
The last 23 columns give the allele sizes for the amplified microsatellite loci (1 column per locus, each allele is coded by a 3 digit number).
Missing data are encoded by "999"
DNA sequences (CesA3 gene; long fragment)
Note that North-American isolates have IDs beginning with MS
PV_quanti_traits_partial_resist
Quantitative traits of pathogenicity of Plasmopara viticola (oomycete) from two origins (susceptible and resistant grapevine hosts) when inoculated on different hosts (susceptible and resistant